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IMGVR_UViG_3300021495_000001-3300021495-Ga0190352_100000355
Arc-VirIMGVR_UViG_3300021495_000001-3300021495-Ga0190352_100000355
Identity
- Kingdom:
- archaea
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-97
Domain cluster:
rep: OP751148.1__WAB08796.1__SEA_SUCCESS_9__00009__D17-93
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13730.13 best | HTH_36 | 34.6 | 1.90e-08 | 63.7% | 96.4% |
D2
high
residues 171-262
Domain cluster:
rep: IMGVR_UViG_3300011438_000020-3300011438-Ga0137451_100004536__D167-258
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.64 | 40.0 | 4.74e-01 | 80.4% | 98.3% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.61 | 41.0 | 3.80e-01 | 70.7% | 98.4% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.57 | 39.0 | 4.08e-01 | 70.7% | 76.7% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.56 | 36.0 | 4.10e-01 | 73.9% | 91.0% |
| 2jxuA00 | 1.10.3680.10 | Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like | 0.55 | 46.0 | 3.92e-01 | 93.5% | 58.8% |
| 1fx0A03 | 1.20.150.20 | Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain | 0.54 | 41.0 | 3.68e-01 | 82.6% | 58.1% |
| 1kyqA03 | 1.10.3280.10 | Mainly Alpha › Orthogonal Bundle › Siro heme synthase C-terminal domain-like › Siroheme synthase; domain 3 | 0.52 | 39.0 | 4.08e-01 | 91.3% | 88.1% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.52 | 37.0 | 3.68e-01 | 75.0% | 74.7% |
| 1ls1A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.52 | 36.0 | 3.71e-01 | 71.7% | 78.7% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.51 | 41.0 | 3.78e-01 | 87.0% | 86.2% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.51 | 34.0 | 3.63e-01 | 83.7% | 79.0% |
| 1fx8A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.50 | 41.0 | 3.05e-01 | 90.2% | 50.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3704554 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 53.0 | 5.44e-01 | 90.2% | 98.9% |
| 3610001 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 49.0 | 4.94e-01 | 85.9% | 96.7% |
| 3593892 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.60 | 49.0 | 4.87e-01 | 91.3% | 94.7% |
| 3690980 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.59 | 44.0 | 4.26e-01 | 80.4% | 73.3% |
| 3930155 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 4.29e-01 | 83.7% | 81.8% |
| 3389399 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.57 | 38.0 | 3.67e-01 | 79.3% | 59.0% |
| 4501339 | 148.1.3.392 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RP853 | 0.57 | 45.0 | 4.81e-01 | 87.0% | 100.0% |
| 4945955 | 181.1.1.32 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 | 0.56 | 36.0 | 3.72e-01 | 84.8% | 69.4% |
| 4024241 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.56 | 39.0 | 4.20e-01 | 91.3% | 85.9% |
| 3940544 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 46.0 | 4.49e-01 | 96.7% | 93.3% |
| 4025614 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.54 | 43.0 | 3.53e-01 | 89.1% | 95.1% |
| 5035414 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.54 | 37.0 | 3.76e-01 | 70.7% | 74.4% |
| 3563012 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.54 | 35.0 | 3.68e-01 | 77.2% | 75.0% |
| 4512923 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.54 | 35.0 | 3.66e-01 | 85.9% | 71.8% |
| 4032062 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.54 | 44.0 | 4.12e-01 | 87.0% | 86.4% |
| 4994898 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.53 | 38.0 | 3.97e-01 | 79.3% | 80.0% |
| 4960056 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.53 | 40.0 | 4.01e-01 | 80.4% | 91.6% |
| 5000678 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 40.0 | 3.89e-01 | 82.6% | 89.0% |
| 5032563 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 35.0 | 3.32e-01 | 70.7% | 87.0% |
| 5068278 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.51 | 37.0 | 3.61e-01 | 76.1% | 69.5% |
| 3499902 | 181.1.1.12 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SCAF11-like_C | 0.51 | 36.0 | 3.84e-01 | 72.8% | 90.5% |
| 3721752 | 5086.1.1.170 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Not3 | 0.51 | 41.0 | 3.74e-01 | 89.1% | 90.4% |
D3
high
residues 280-389
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 41.0 | 4.55e-01 | 82.7% | 80.0% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 39.0 | 4.42e-01 | 77.3% | 79.5% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 47.0 | 4.88e-01 | 94.5% | 84.0% |
| 3am6A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 40.0 | 3.24e-01 | 70.0% | 95.1% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.57 | 41.0 | 4.44e-01 | 82.7% | 90.1% |
| 2pv4A00 | 1.10.3440.10 | Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like | 0.57 | 47.0 | 4.40e-01 | 94.5% | 88.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 40.0 | 4.39e-01 | 90.9% | 97.7% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.55 | 36.0 | 4.06e-01 | 84.5% | 90.1% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.54 | 39.0 | 4.05e-01 | 87.3% | 79.6% |
| 2nr9A00 | 1.20.1540.10 | Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like | 0.54 | 45.0 | 3.81e-01 | 93.6% | 88.5% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 36.0 | 4.01e-01 | 90.0% | 98.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3995940 | 148.1.3.45 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYN_lid | 0.67 | 52.0 | 5.14e-01 | 92.7% | 77.5% |
| 61904 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.63 | 40.0 | 4.43e-01 | 78.2% | 80.2% |
| 3288147 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.61 | 38.0 | 3.99e-01 | 80.0% | 67.0% |
| 3286382 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.58 | 41.0 | 3.69e-01 | 72.7% | 62.7% |
| 3377889 | 632.1.1.31 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › TB2_DP1_HVA22 | 0.55 | 40.0 | 4.12e-01 | 80.9% | 79.0% |
| 3653474 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.53 | 35.0 | 4.01e-01 | 84.5% | 93.8% |
| 4927740 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 46.0 | 4.37e-01 | 99.1% | 83.8% |
| 4641281 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.51 | 44.0 | 4.23e-01 | 92.7% | 81.6% |
| 3559913 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.51 | 44.0 | 4.23e-01 | 91.8% | 80.8% |
| 3581840 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.50 | 39.0 | 4.15e-01 | 93.6% | 94.7% |