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IMGVR_UViG_3300021500_000017-3300021500-Ga0190347_100080311

Arc-Vir

IMGVR_UViG_3300021500_000017-3300021500-Ga0190347_100080311

Quality

72.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-59
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wrnA02 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.69 58.0 4.76e-01 96.4% 74.3%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 58.0 4.95e-01 100.0% 80.4%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 47.0 3.00e-01 80.0% 25.8%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.65 51.0 3.83e-01 89.1% 57.0%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.65 48.0 3.93e-01 83.6% 73.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 56.0 4.65e-01 100.0% 88.0%
2j0wA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 53.0 4.72e-01 96.4% 85.2%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 53.0 4.43e-01 100.0% 92.4%
3vgfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 51.0 4.55e-01 96.4% 67.1%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.62 52.0 3.80e-01 96.4% 91.5%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 45.0 3.44e-01 80.0% 50.0%
1i1rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.26e-01 96.4% 73.0%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 49.0 3.83e-01 94.5% 55.3%
4itxA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 49.0 3.85e-01 96.4% 79.6%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 3.72e-01 92.7% 51.4%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.60 45.0 4.04e-01 83.6% 78.0%
4umgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.11e-01 96.4% 71.6%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.59 49.0 3.85e-01 92.7% 78.9%
4rpoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 40.0 3.12e-01 92.7% 33.1%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 41.0 3.28e-01 100.0% 36.0%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.04e-01 94.5% 74.0%
3nx3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 48.0 3.70e-01 100.0% 44.7%
2y1rK00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 4.05e-01 94.5% 91.3%
7c51A01 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.58 44.0 3.62e-01 87.3% 87.4%
4mlaA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.57 44.0 3.03e-01 89.1% 41.3%
2o8bB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 40.0 3.12e-01 74.5% 38.2%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.57 45.0 3.57e-01 100.0% 47.6%
3vvvA00 2.60.40.2840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 48.0 3.96e-01 100.0% 74.1%
2c9aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.03e-01 96.4% 73.2%
1e3mA01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.57 45.0 3.55e-01 89.1% 47.2%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 46.0 3.96e-01 96.4% 70.4%
4m9pA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.94e-01 96.4% 71.0%
2vycA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 45.0 3.23e-01 96.4% 63.2%
2jisA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 45.0 3.11e-01 100.0% 35.1%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.55 43.0 3.99e-01 83.6% 79.4%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.55 49.0 3.67e-01 100.0% 47.1%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 43.0 2.97e-01 83.6% 45.7%
1jqgA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.55 42.0 3.69e-01 89.1% 65.9%
1xhcA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 41.0 4.29e-01 96.4% 93.8%
3gveA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 37.0 2.33e-01 74.5% 88.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 47.0 3.52e-01 100.0% 72.9%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.54 40.0 3.68e-01 85.5% 88.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 41.0 3.88e-01 85.5% 88.2%
1vcaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.86e-01 96.4% 75.3%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.57e-01 87.3% 69.0%
1cq3A00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.53 47.0 3.10e-01 100.0% 69.2%
5jciA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 40.0 3.65e-01 100.0% 58.4%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.49e-01 94.5% 76.9%
2f8mA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 38.0 3.48e-01 83.6% 89.9%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 37.0 2.96e-01 83.6% 85.5%
3bv8A00 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.50 39.0 3.48e-01 90.9% 57.6%
4jotA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 42.0 2.93e-01 100.0% 96.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3554886 5.1.4.155 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.70 50.0 3.05e-01 78.2% 20.5%
3208784 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.68 50.0 3.61e-01 80.0% 37.5%
4353767 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.67 57.0 4.87e-01 94.5% 72.2%
4021812 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.67 46.0 3.41e-01 72.7% 61.1%
5072735 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.66 56.0 4.47e-01 100.0% 47.3%
3303897 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.66 52.0 3.70e-01 90.9% 95.7%
3672898 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.65 49.0 3.64e-01 89.1% 34.4%
3901822 5.1.5.50 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › MIOS_WD40 0.65 48.0 2.92e-01 80.0% 20.8%
4399144 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.65 44.0 3.35e-01 70.9% 66.7%
3296784 304.6.1.5 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › Cytokin-bind 0.65 51.0 3.26e-01 89.1% 35.5%
3717061 304.107.1.5 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.65 51.0 4.13e-01 90.9% 87.8%
3484180 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.64 55.0 3.41e-01 98.2% 52.2%
4027660 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.64 47.0 3.83e-01 80.0% 89.5%
3938003 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.63 48.0 4.06e-01 83.6% 86.3%
4029231 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.63 50.0 4.09e-01 87.3% 81.0%
3972580 331.1.1.3 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.63 45.0 4.10e-01 80.0% 100.0%
3635930 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 44.0 3.14e-01 78.2% 26.5%
3777599 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.45e-01 80.0% 47.9%
3843802 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 45.0 3.41e-01 80.0% 46.2%
3270768 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.62 44.0 3.63e-01 76.4% 86.7%
3989409 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.62 49.0 3.71e-01 89.1% 55.7%
3252765 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.62 48.0 3.67e-01 100.0% 35.6%
5010635 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.61 49.0 3.70e-01 96.4% 57.6%
3910021 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 49.0 4.09e-01 96.4% 61.9%
4015296 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 47.0 4.36e-01 87.3% 67.1%
3981283 223.3.1.19 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › PF30382, PF30384 0.59 41.0 2.47e-01 72.7% 58.8%
3059233 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 49.0 3.55e-01 100.0% 32.5%
4951143 295.1.1.53 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 0.59 45.0 4.59e-01 85.5% 83.6%
3401203 59.1.3.0 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.58 42.0 3.63e-01 76.4% 60.0%
4026446 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 38.0 3.27e-01 90.9% 38.9%
3695778 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 45.0 3.45e-01 90.9% 95.2%
3944542 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.57 45.0 3.80e-01 90.9% 85.0%
3888844 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.10e-01 96.4% 76.7%
4671096 304.4.1.54 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.56 44.0 3.50e-01 92.7% 73.1%
3254199 2003.1.5.38 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SAM_MT 0.56 39.0 2.41e-01 72.7% 44.4%
3565424 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.56 42.0 3.26e-01 81.8% 40.0%
3297150 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.51e-01 83.6% 52.0%
3571806 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.55 38.0 3.07e-01 92.7% 40.0%
5024288 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.55 43.0 3.68e-01 96.4% 79.0%
3530209 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.55 40.0 2.57e-01 78.2% 21.0%
4002771 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.17e-01 83.6% 34.8%
4261865 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.54 43.0 3.70e-01 94.5% 80.0%
5022659 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 43.0 3.99e-01 92.7% 96.0%
5047728 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 43.0 3.25e-01 92.7% 35.6%
3306218 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 40.0 3.08e-01 83.6% 37.8%
3741774 5046.1.1.0 extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b 0.53 44.0 3.74e-01 96.4% 72.6%
3867705 3338.2.1.1 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › Pep_M12B_propep 0.52 36.0 2.74e-01 72.7% 32.3%
4943895 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 47.0 3.09e-01 100.0% 45.5%
5050618 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.29e-01 100.0% 38.6%
3251796 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.26e-01 100.0% 41.4%
3584346 11.1.1.874 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set, Ig_3 0.51 42.0 3.69e-01 96.4% 73.3%
3846506 5.1.4.148 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR93 0.51 41.0 2.32e-01 85.5% 93.3%
4143108 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 41.0 3.30e-01 96.4% 64.0%
4640369 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 40.0 3.21e-01 85.5% 57.1%
3902508 11.1.1.850 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28354 0.50 41.0 3.60e-01 96.4% 67.8%
3470080 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 40.0 3.62e-01 90.9% 73.4%