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IMGVR_UViG_3300021500_000017-3300021500-Ga0190347_100080324

Arc-Vir

IMGVR_UViG_3300021500_000017-3300021500-Ga0190347_100080324

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-114
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 52.0 4.13e-01 86.4% 38.2%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.66 47.0 3.94e-01 75.0% 63.4%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 46.0 3.03e-01 75.0% 22.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 41.0 4.55e-01 94.3% 87.9%
3cxbA01 3.30.2440.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA 0.60 43.0 3.91e-01 73.9% 78.3%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 51.0 4.42e-01 98.9% 75.2%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 3.22e-01 89.8% 57.9%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 43.0 2.98e-01 79.5% 38.4%
2q74A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 40.0 3.53e-01 72.7% 89.1%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.97e-01 80.7% 35.5%
4ri1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 47.0 3.71e-01 88.6% 97.7%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 48.0 3.18e-01 96.6% 41.5%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.87e-01 95.5% 72.6%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 4.16e-01 98.9% 80.1%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 47.0 3.76e-01 92.0% 73.3%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.56 39.0 3.46e-01 75.0% 56.1%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 4.06e-01 94.3% 82.1%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.55 40.0 3.96e-01 77.3% 91.4%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 3.02e-01 89.8% 39.6%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 48.0 3.38e-01 98.9% 85.1%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.54 45.0 3.19e-01 93.2% 75.7%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 42.0 3.33e-01 84.1% 88.3%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.50e-01 71.6% 77.8%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 42.0 3.46e-01 87.5% 94.8%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 46.0 3.21e-01 96.6% 90.2%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.14e-01 95.5% 86.1%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 40.0 3.24e-01 81.8% 80.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 45.0 3.09e-01 97.7% 65.4%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 44.0 3.57e-01 94.3% 58.4%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 45.0 4.14e-01 96.6% 85.6%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.45e-01 100.0% 65.5%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.37e-01 98.9% 76.2%
3pzjB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 44.0 3.50e-01 94.3% 77.0%
1k8iB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.51 35.0 3.50e-01 70.5% 83.5%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 39.0 3.36e-01 86.4% 91.1%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.51 44.0 3.28e-01 98.9% 65.7%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.50 39.0 3.34e-01 87.5% 91.1%
3bywC00 2.60.120.610 Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain 0.50 39.0 3.32e-01 87.5% 62.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3581854 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 43.0 4.32e-01 84.1% 60.0%
3247665 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 52.0 4.51e-01 94.3% 51.1%
4943564 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.70 44.0 4.49e-01 73.9% 65.9%
3232545 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.68 49.0 3.71e-01 81.8% 30.2%
3586112 5.1.5.134 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_EIPR1 0.67 47.0 3.36e-01 73.9% 29.0%
4419937 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.66 45.0 4.60e-01 70.5% 89.4%
3225830 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.65 58.0 4.43e-01 98.9% 72.5%
3367547 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.64 57.0 4.39e-01 97.7% 71.1%
4031638 7089.1.1.1 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF1108 0.64 45.0 4.62e-01 77.3% 76.5%
3229101 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.63 42.0 4.55e-01 81.8% 82.2%
1148094 330.12.1.1 a+b two layers › dsRBD-like › Transcription regulator P7 › Transcription regulator P7 › Xp10_P7 0.63 42.0 4.53e-01 75.0% 82.2%
3543475 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.63 47.0 3.11e-01 79.5% 31.5%
3624688 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.63 48.0 3.22e-01 80.7% 36.3%
3428265 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.62 52.0 4.56e-01 93.2% 100.0%
3520717 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 56.0 4.66e-01 100.0% 86.0%
3239304 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.61 46.0 3.54e-01 93.2% 34.6%
3596915 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 53.0 3.26e-01 100.0% 27.4%
3229011 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 42.0 3.63e-01 73.9% 45.5%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 51.0 5.07e-01 97.7% 90.0%
None 0.60 53.0 3.25e-01 100.0% 34.2%
3621570 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.60 50.0 3.35e-01 94.3% 50.0%
3707133 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.59 52.0 3.98e-01 100.0% 91.9%
4309203 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.59 47.0 3.75e-01 87.5% 75.6%
5001279 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.58 50.0 3.40e-01 97.7% 33.7%
3972476 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.58 40.0 3.46e-01 72.7% 57.9%
3785876 5.1.4.262 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.58 51.0 3.34e-01 98.9% 91.0%
4324615 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 52.0 4.26e-01 97.7% 76.1%
3691332 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.58 51.0 3.27e-01 97.7% 74.8%
3924970 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 51.0 3.40e-01 97.7% 72.1%
None 0.57 51.0 3.14e-01 96.6% 48.7%
3390571 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.57 51.0 3.13e-01 96.6% 47.6%
5067232 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.57 40.0 3.41e-01 71.6% 88.3%
3549402 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.57 51.0 3.13e-01 96.6% 47.7%
4317653 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 50.0 3.34e-01 96.6% 68.4%
3230776 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.57 51.0 3.34e-01 98.9% 90.1%
5022885 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.57 49.0 3.06e-01 93.2% 44.6%
None 0.57 47.0 3.16e-01 90.9% 38.8%
3410972 5.1.4.267 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.56 50.0 3.10e-01 98.9% 80.6%
2793081 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.56 49.0 3.45e-01 94.3% 72.2%
5018904 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.56 43.0 3.43e-01 88.6% 38.5%
4681452 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.56 48.0 3.26e-01 98.9% 82.5%
3220090 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.12e-01 100.0% 38.7%
3243384 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 44.0 3.09e-01 88.6% 67.4%
3609287 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 48.0 3.38e-01 97.7% 49.2%
3941042 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.55 47.0 3.18e-01 95.5% 85.6%
4928574 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.55 42.0 4.29e-01 93.2% 84.1%
3799340 5.1.3.114 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MIOS_WD40 0.55 48.0 3.19e-01 95.5% 77.7%
3594377 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.35e-01 98.9% 46.9%
3707019 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.96e-01 89.8% 61.5%
3708146 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 50.0 3.37e-01 100.0% 87.0%
3625811 5.1.4.374 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_THOC3 0.55 50.0 3.36e-01 100.0% 85.0%
3254075 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 3.04e-01 90.9% 60.6%
4857919 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.54 46.0 3.09e-01 95.5% 59.9%
3767813 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 3.25e-01 98.9% 44.7%
3730947 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 3.41e-01 98.9% 73.3%
4959674 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 43.0 3.60e-01 87.5% 85.3%
4533086 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 44.0 3.10e-01 94.3% 51.1%
3896490 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 46.0 3.52e-01 100.0% 69.5%
3642082 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 46.0 3.14e-01 96.6% 80.3%
5037566 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 42.0 4.00e-01 90.9% 84.8%
1395707 5084.5.1.16 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BVU_2266-like 0.51 44.0 3.28e-01 98.9% 65.7%