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IMGVR_UViG_3300021500_000017-3300021500-Ga0190347_10008036

Arc-Vir

IMGVR_UViG_3300021500_000017-3300021500-Ga0190347_10008036

Quality

93.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f22A00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.68 51.0 3.77e-01 84.3% 52.8%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.66 54.0 5.19e-01 94.1% 85.0%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.48e-01 100.0% 73.3%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.62 51.0 3.14e-01 100.0% 15.5%
1kgqA01 1.10.166.10 Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain 0.62 49.0 4.38e-01 88.2% 62.9%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.65e-01 76.5% 48.9%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.72e-01 98.0% 90.0%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.60 48.0 3.48e-01 94.1% 54.6%
6k6iA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 48.0 3.18e-01 90.2% 81.7%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 47.0 3.07e-01 96.1% 36.6%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 3.21e-01 92.2% 32.5%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 44.0 3.60e-01 88.2% 42.2%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.09e-01 74.5% 64.5%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.15e-01 98.0% 77.5%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.57 45.0 2.85e-01 96.1% 16.9%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.57 46.0 3.26e-01 96.1% 86.7%
3e3rA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 43.0 3.56e-01 84.3% 89.9%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.25e-01 100.0% 87.7%
4h17A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.56 49.0 3.30e-01 98.0% 52.3%
3dupA02 3.30.750.160 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.56 41.0 3.26e-01 82.4% 37.7%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.81e-01 96.1% 72.4%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 40.0 3.58e-01 80.4% 98.8%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.89e-01 98.0% 81.1%
6bfnB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 44.0 3.03e-01 92.2% 72.3%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 3.62e-01 98.0% 43.4%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 44.0 2.96e-01 94.1% 25.3%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.04e-01 98.0% 85.4%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.55 48.0 3.39e-01 100.0% 87.8%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.72e-01 92.2% 74.2%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 3.82e-01 100.0% 72.3%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.77e-01 96.1% 80.7%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 3.88e-01 98.0% 62.1%
6tqfA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.54 43.0 2.58e-01 92.2% 71.6%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.90e-01 98.0% 81.2%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 3.01e-01 84.3% 45.7%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.05e-01 100.0% 79.5%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 3.24e-01 98.0% 41.7%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.22e-01 96.1% 53.7%
2ddzE00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 40.0 2.77e-01 86.3% 45.3%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 3.01e-01 100.0% 57.9%
6hbzA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 43.0 3.06e-01 92.2% 79.9%
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.47e-01 100.0% 80.7%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.50 39.0 2.81e-01 84.3% 67.6%
4xhpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 42.0 2.97e-01 94.1% 44.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3194261 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 52.0 3.93e-01 72.5% 34.8%
3213629 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.75 60.0 3.68e-01 90.2% 14.4%
4014117 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.74 61.0 3.77e-01 94.1% 17.1%
3187789 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.73 60.0 3.66e-01 94.1% 16.4%
4984241 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.72 57.0 3.57e-01 90.2% 15.9%
3171534 3470.1.1.46 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › VanZ 0.72 48.0 3.88e-01 70.6% 38.4%
3596846 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.72 55.0 3.99e-01 84.3% 40.0%
3731014 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.72 59.0 3.64e-01 94.1% 18.4%
3299780 109.2.1.3 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_9 0.71 61.0 3.41e-01 92.2% 11.2%
5040463 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.71 55.0 3.40e-01 90.2% 14.9%
3591136 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 56.0 3.89e-01 92.2% 52.2%
4509560 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.70 54.0 3.43e-01 90.2% 16.8%
3602833 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.69 53.0 3.33e-01 88.2% 88.3%
3272724 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.69 57.0 3.48e-01 96.1% 17.0%
3973617 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 53.0 3.34e-01 92.2% 16.3%
4981233 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.68 54.0 3.40e-01 92.2% 16.1%
4857394 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.66 50.0 3.90e-01 88.2% 35.5%
3739470 192.2.1.31 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 0.66 49.0 3.55e-01 82.4% 28.3%
3702712 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 52.0 3.40e-01 86.3% 42.8%
3787647 192.2.1.31 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 0.66 49.0 3.95e-01 82.4% 41.0%
3947868 2484.1.1.87 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C 0.66 47.0 3.32e-01 82.4% 23.6%
1240484 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.66 54.0 3.36e-01 94.1% 15.9%
3164257 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.65 51.0 3.26e-01 96.1% 16.2%
4858145 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.65 50.0 3.19e-01 90.2% 16.1%
3598773 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.65 51.0 3.33e-01 88.2% 43.6%
3976992 2002.1.1.300 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase 0.65 51.0 3.25e-01 96.1% 16.3%
2439674 2002.1.1.300 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase 0.64 47.0 3.08e-01 88.2% 16.0%
3165061 1075.4.1.2 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 0.64 48.0 2.96e-01 84.3% 63.8%
3593719 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 50.0 3.46e-01 88.2% 43.8%
3281989 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.63 44.0 2.88e-01 80.4% 15.1%
3814043 101.1.10.21 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C 0.63 50.0 3.24e-01 92.2% 37.7%
5023013 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.62 51.0 3.43e-01 96.1% 35.3%
3606470 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 49.0 3.36e-01 90.2% 43.6%
3714994 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 49.0 3.30e-01 88.2% 41.5%
3614763 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 48.0 3.71e-01 90.2% 85.0%
3601023 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 47.0 3.15e-01 88.2% 45.7%
5062332 2003.1.1.386 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_C 0.59 45.0 2.69e-01 82.4% 62.3%
3949964 1075.4.1.2 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 0.59 46.0 2.78e-01 88.2% 83.2%
5003867 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.59 44.0 3.06e-01 86.3% 52.0%
3986601 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.58 51.0 4.43e-01 100.0% 83.7%
4659871 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.58 47.0 3.93e-01 94.1% 60.0%
3393979 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.58 46.0 3.79e-01 96.1% 92.7%
3550852 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.58 47.0 3.86e-01 94.1% 71.0%
3962675 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 47.0 4.14e-01 94.1% 87.5%
3481678 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.57 44.0 3.81e-01 84.3% 86.3%
3961356 1075.4.1.2 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 0.57 45.0 2.72e-01 90.2% 34.7%
4340567 2003.2.1.1 a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.57 46.0 2.81e-01 96.1% 61.8%
3998932 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 45.0 3.21e-01 94.1% 38.8%
4185879 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.56 48.0 4.09e-01 98.0% 64.7%
3728848 192.29.1.142 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NACHT_N 0.55 44.0 2.87e-01 88.2% 20.4%
4217425 101.1.2.304 alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.55 46.0 3.85e-01 94.1% 57.8%
4337722 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.55 44.0 3.83e-01 92.2% 65.9%
3605428 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.55 43.0 2.90e-01 92.2% 45.3%
2613 101.1.2.105 alpha arrays › HTH › HTH › winged helix domain › MotA_activ 0.54 47.0 3.88e-01 98.0% 62.1%
4599024 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.54 40.0 3.48e-01 84.3% 55.3%
3883917 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.53 38.0 2.67e-01 82.4% 49.0%
3890034 109.6.1.3 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.52 42.0 2.79e-01 92.2% 36.1%
4029585 5081.1.1.2 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 0.52 43.0 2.94e-01 98.0% 96.1%
3637922 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.51 43.0 2.54e-01 100.0% 11.0%
3712132 5081.1.1.2 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 0.51 40.0 2.76e-01 88.2% 52.3%
3838564 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.50 41.0 3.87e-01 92.2% 75.0%
3946197 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.50 40.0 2.57e-01 100.0% 53.0%
3204146 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.50 38.0 2.72e-01 96.1% 38.6%