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IMGVR_UViG_3300021500_000103-3300021500-Ga0190347_100086410
Arc-VirIMGVR_UViG_3300021500_000103-3300021500-Ga0190347_100086410
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-166
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.70 | 51.0 | 5.19e-01 | 76.8% | 100.0% |
| 3nzpB03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 46.0 | 5.30e-01 | 97.3% | 96.2% |
| 7qpgW01 | 1.10.357.150 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.69 | 51.0 | 4.30e-01 | 78.6% | 64.7% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.68 | 49.0 | 4.99e-01 | 75.0% | 98.2% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.66 | 52.0 | 5.57e-01 | 86.6% | 97.9% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.66 | 42.0 | 4.98e-01 | 75.0% | 97.3% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.65 | 51.0 | 4.98e-01 | 95.5% | 75.6% |
| 1llaA03 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.64 | 51.0 | 3.90e-01 | 85.7% | 58.9% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 44.0 | 4.42e-01 | 97.3% | 71.7% |
| 1jnrA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.62 | 43.0 | 4.24e-01 | 71.4% | 76.9% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 44.0 | 4.59e-01 | 76.8% | 95.3% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 43.0 | 4.51e-01 | 75.0% | 100.0% |
| 5f4bA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.59 | 34.0 | 2.93e-01 | 94.6% | 35.8% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 41.0 | 4.57e-01 | 71.4% | 100.0% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 47.0 | 5.02e-01 | 88.4% | 100.0% |
| 1chuA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.57 | 40.0 | 4.43e-01 | 73.2% | 100.0% |
| 1ki1B01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.57 | 50.0 | 4.20e-01 | 100.0% | 79.4% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 49.0 | 4.58e-01 | 99.1% | 81.3% |
| 7watB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 45.0 | 3.28e-01 | 88.4% | 70.4% |
| 1uurA01 | 1.20.58.240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 | 0.55 | 41.0 | 4.19e-01 | 80.4% | 99.1% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 37.0 | 3.33e-01 | 72.3% | 48.8% |
| 1kf6A03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.54 | 42.0 | 4.16e-01 | 83.9% | 90.8% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 41.0 | 4.28e-01 | 85.7% | 91.1% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.53 | 44.0 | 3.94e-01 | 93.8% | 94.7% |
| 5g0gA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.53 | 45.0 | 3.26e-01 | 97.3% | 40.3% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.53 | 36.0 | 3.86e-01 | 73.2% | 85.7% |
| 3sigA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.52 | 46.0 | 3.49e-01 | 96.4% | 61.1% |
| 2xhsA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 43.0 | 3.42e-01 | 91.1% | 47.3% |
| 3piwA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 43.0 | 3.92e-01 | 100.0% | 65.6% |
| 1by1A00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.52 | 45.0 | 3.75e-01 | 98.2% | 71.3% |
| 4huqS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.52 | 46.0 | 4.07e-01 | 100.0% | 89.6% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.51 | 36.0 | 3.27e-01 | 76.8% | 52.2% |
| 2chnB03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.51 | 44.0 | 3.79e-01 | 96.4% | 89.4% |
| 5mi7A03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.51 | 43.0 | 3.34e-01 | 95.5% | 61.0% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 43.0 | 3.99e-01 | 100.0% | 72.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3987415 | 601.1.1.11 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › EcsB | 0.65 | 55.0 | 5.02e-01 | 92.9% | 78.6% |
| 3295115 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.65 | 48.0 | 5.22e-01 | 97.3% | 95.6% |
| 4499722 | 5054.1.1.27 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › tRNA-synt_2_TM | 0.63 | 42.0 | 4.55e-01 | 100.0% | 81.1% |
| 3492339 | 174.1.1.45 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › MENTAL | 0.63 | 57.0 | 5.11e-01 | 100.0% | 85.8% |
| 3261117 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.63 | 46.0 | 4.88e-01 | 93.8% | 89.5% |
| 5019950 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 41.0 | 2.85e-01 | 71.4% | 20.6% |
| 4628602 | 5000.4.1.1 ↗ | alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N | 0.62 | 55.0 | 4.19e-01 | 99.1% | 45.9% |
| 3681859 | 5069.1.3.54 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Per1 | 0.62 | 43.0 | 4.22e-01 | 73.2% | 84.8% |
| 4945009 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.61 | 54.0 | 4.61e-01 | 97.3% | 76.7% |
| 3832481 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.60 | 43.0 | 2.66e-01 | 73.2% | 14.8% |
| 3792008 | 604.1.1.104 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › ANC1_spectrin | 0.60 | 44.0 | 4.44e-01 | 75.9% | 80.0% |
| 3284782 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.59 | 41.0 | 4.14e-01 | 70.5% | 75.5% |
| 3192888 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.59 | 46.0 | 4.97e-01 | 100.0% | 100.0% |
| 5018993 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.59 | 39.0 | 3.78e-01 | 75.9% | 60.0% |
| 3813600 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.58 | 52.0 | 4.90e-01 | 100.0% | 84.4% |
| 3934273 | 3948.1.1.0 ↗ | alpha bundles › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain | 0.58 | 50.0 | 4.26e-01 | 97.3% | 87.4% |
| 5030139 | 633.22.1.1 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR | 0.57 | 49.0 | 4.68e-01 | 97.3% | 92.8% |
| 3281498 | 604.24.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › PaaX_C | 0.57 | 38.0 | 4.39e-01 | 75.0% | 96.2% |
| 4385509 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.57 | 37.0 | 4.06e-01 | 95.5% | 84.7% |
| 3939448 | 3948.1.1.0 ↗ | alpha bundles › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain | 0.57 | 49.0 | 4.31e-01 | 96.4% | 97.6% |
| 3943307 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 37.0 | 4.13e-01 | 96.4% | 91.8% |
| 3712159 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 49.0 | 4.41e-01 | 100.0% | 72.3% |
| 3627658 | 109.4.1.499 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS5_C | 0.54 | 43.0 | 2.82e-01 | 85.7% | 19.6% |
| 4001527 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.54 | 45.0 | 4.16e-01 | 90.2% | 85.0% |
| 3339360 | 5073.1.1.11 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C | 0.53 | 46.0 | 3.21e-01 | 98.2% | 74.6% |
| 2412 | 532.2.1.3 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › TyeA | 0.53 | 36.0 | 3.86e-01 | 73.2% | 85.7% |
| 3733249 | 3704.1.1.0 ↗ | alpha superhelices › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain | 0.52 | 37.0 | 3.12e-01 | 72.3% | 42.6% |
| 3739123 | 601.1.2.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ | 0.52 | 44.0 | 3.75e-01 | 98.2% | 61.0% |
| 3612403 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.51 | 45.0 | 4.17e-01 | 100.0% | 77.9% |