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IMGVR_UViG_3300021503_000048-3300021503-Ga0190348_100089210
Arc-VirIMGVR_UViG_3300021503_000048-3300021503-Ga0190348_100089210
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-143
Domain cluster:
rep: IMGVR_UViG_3300030493_000399-3300030493-Ga0310040_100013118__D1-105
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00589.28 best | Phage_integrase | 30.5 | 4.20e-07 | 99.0% | 32.0% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.83 | 78.0 | 5.87e-01 | 100.0% | 55.2% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.81 | 74.0 | 6.05e-01 | 97.0% | 57.8% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.80 | 70.0 | 5.37e-01 | 93.0% | 63.0% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.60 | 40.0 | 4.19e-01 | 86.0% | 74.5% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.59 | 44.0 | 3.92e-01 | 80.0% | 95.2% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 31.0 | 3.87e-01 | 73.0% | 87.9% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 38.0 | 3.99e-01 | 71.0% | 93.5% |
| 3so6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.97e-01 | 86.0% | 100.0% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.55 | 40.0 | 3.62e-01 | 77.0% | 97.9% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 40.0 | 4.28e-01 | 78.0% | 95.2% |
| 3d8dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 40.0 | 3.61e-01 | 80.0% | 98.6% |
| 3u4zA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 37.0 | 3.63e-01 | 73.0% | 76.1% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 40.0 | 3.75e-01 | 81.0% | 97.6% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 39.0 | 3.74e-01 | 82.0% | 87.6% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 32.0 | 3.73e-01 | 76.0% | 92.6% |
| 3voqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 43.0 | 4.10e-01 | 92.0% | 99.1% |
| 4akmB00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 35.0 | 3.10e-01 | 70.0% | 92.4% |
| 4wfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 39.0 | 3.43e-01 | 83.0% | 81.0% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.51 | 31.0 | 3.29e-01 | 70.0% | 69.8% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 35.0 | 3.18e-01 | 87.0% | 54.2% |
| 3f02B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 32.0 | 3.25e-01 | 77.0% | 64.0% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 27.0 | 2.82e-01 | 72.0% | 56.2% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4936284 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.93 | 77.0 | 7.27e-01 | 94.0% | 74.8% |
| 4973226 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.91 | 77.0 | 7.15e-01 | 94.0% | 72.5% |
| 5016981 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.88 | 74.0 | 6.89e-01 | 94.0% | 73.3% |
| 4954764 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.87 | 68.0 | 6.73e-01 | 94.0% | 78.1% |
| 4952765 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 79.0 | 6.91e-01 | 100.0% | 68.6% |
| 5029991 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 75.0 | 6.87e-01 | 94.0% | 72.8% |
| 4278298 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 79.0 | 7.03e-01 | 97.0% | 73.3% |
| 4428937 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 74.0 | 6.88e-01 | 93.0% | 75.0% |
| 5032561 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 68.0 | 6.73e-01 | 94.0% | 79.0% |
| 3588110 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 79.0 | 6.92e-01 | 97.0% | 80.0% |
| 5028332 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 75.0 | 6.87e-01 | 94.0% | 73.6% |
| 5027341 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 70.0 | 5.84e-01 | 90.0% | 53.8% |
| 5083506 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 79.0 | 6.21e-01 | 97.0% | 54.6% |
| 3589779 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 77.0 | 6.51e-01 | 94.0% | 78.7% |
| 3588206 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 78.0 | 6.67e-01 | 97.0% | 74.0% |
| 4313957 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 80.0 | 7.10e-01 | 100.0% | 74.8% |
| 4177205 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.84 | 64.0 | 6.60e-01 | 93.0% | 83.2% |
| 4975762 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 75.0 | 6.91e-01 | 94.0% | 76.0% |
| 4153666 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 77.0 | 6.87e-01 | 97.0% | 73.3% |
| 4964228 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 74.0 | 6.62e-01 | 94.0% | 68.9% |
| 5052541 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 75.0 | 6.83e-01 | 94.0% | 74.4% |
| 4112553 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 77.0 | 6.68e-01 | 97.0% | 73.8% |
| 3587374 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 75.0 | 6.21e-01 | 94.0% | 79.4% |
| 4120466 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 77.0 | 6.84e-01 | 97.0% | 74.1% |
| 4180367 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 79.0 | 6.50e-01 | 100.0% | 67.3% |
| 4979786 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 70.0 | 6.53e-01 | 94.0% | 73.3% |
| 5083074 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 74.0 | 6.32e-01 | 93.0% | 77.3% |
| 1267972 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 79.0 | 6.62e-01 | 100.0% | 79.6% |
| 4192665 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 75.0 | 7.00e-01 | 95.0% | 81.7% |
| 4053930 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 78.0 | 6.71e-01 | 100.0% | 72.0% |
| 4959043 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 74.0 | 6.69e-01 | 94.0% | 83.8% |
| 5035582 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 68.0 | 6.44e-01 | 94.0% | 74.8% |
| 4095013 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 76.0 | 6.76e-01 | 97.0% | 75.6% |
| 3969558 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.83 | 76.0 | 6.76e-01 | 97.0% | 72.6% |
| 3964552 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 76.0 | 6.76e-01 | 97.0% | 74.8% |
| 4981577 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 71.0 | 6.53e-01 | 94.0% | 72.0% |
| 4071300 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 74.0 | 6.57e-01 | 94.0% | 80.0% |
| 4357768 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.83 | 72.0 | 6.53e-01 | 94.0% | 70.8% |
| 4338286 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 75.0 | 6.66e-01 | 96.0% | 71.9% |
| 5037644 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 70.0 | 6.53e-01 | 94.0% | 74.2% |
| 5080069 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 73.0 | 6.82e-01 | 94.0% | 82.5% |
| 4998701 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 73.0 | 5.86e-01 | 94.0% | 56.1% |
| 4980638 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 72.0 | 6.19e-01 | 93.0% | 73.3% |
| 4413773 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 72.0 | 6.39e-01 | 94.0% | 68.1% |
| 3984925 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 74.0 | 6.64e-01 | 94.0% | 75.4% |
| 4042318 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 75.0 | 6.67e-01 | 97.0% | 77.0% |
| 4261355 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 75.0 | 6.57e-01 | 97.0% | 72.9% |
| 4247514 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 75.0 | 6.71e-01 | 98.0% | 72.6% |
| 4969226 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 73.0 | 6.48e-01 | 94.0% | 72.6% |
| 4004713 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 73.0 | 6.50e-01 | 94.0% | 69.6% |
| 4004773 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 73.0 | 6.64e-01 | 94.0% | 74.4% |
| 4960057 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 73.0 | 6.47e-01 | 96.0% | 73.6% |
| 4044870 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 74.0 | 6.61e-01 | 97.0% | 71.9% |
| 4200953 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 76.0 | 6.46e-01 | 100.0% | 74.2% |
| 4210863 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 70.0 | 6.38e-01 | 94.0% | 70.8% |
| 4032881 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 74.0 | 6.60e-01 | 97.0% | 72.6% |
| 4137254 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 73.0 | 6.18e-01 | 96.0% | 74.8% |
| 2319285 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 67.0 | 6.35e-01 | 94.0% | 75.7% |
| 4082783 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 74.0 | 6.26e-01 | 100.0% | 66.3% |
| 5011490 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 71.0 | 6.08e-01 | 94.0% | 76.0% |
| 3942448 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 75.0 | 6.44e-01 | 100.0% | 79.3% |
| 4934137 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 71.0 | 5.98e-01 | 94.0% | 70.3% |
| 5058518 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 71.0 | 5.53e-01 | 94.0% | 48.7% |
| 4463631 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.79 | 71.0 | 6.36e-01 | 97.0% | 75.6% |
| 4981563 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.78 | 62.0 | 6.05e-01 | 84.0% | 94.5% |
| 4940128 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.78 | 69.0 | 6.38e-01 | 94.0% | 82.4% |
| 5072041 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 69.0 | 6.23e-01 | 94.0% | 71.5% |
| 4928148 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.78 | 54.0 | 4.51e-01 | 95.0% | 42.9% |
| 3839222 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 71.0 | 6.22e-01 | 97.0% | 70.0% |
| 3926774 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.76 | 68.0 | 6.06e-01 | 97.0% | 81.4% |
| 3740379 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 33.0 | 4.00e-01 | 71.0% | 91.7% |
| 3178078 | 220.1.1.70 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 | 0.56 | 42.0 | 3.58e-01 | 80.0% | 83.0% |
| 4001056 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.55 | 38.0 | 3.88e-01 | 73.0% | 79.0% |
| 3476014 | 220.1.1.155 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 | 0.54 | 39.0 | 3.99e-01 | 78.0% | 94.0% |