Back to structures

IMGVR_UViG_3300021507_000104-3300021507-Ga0190316_10029764

Arc-Vir

IMGVR_UViG_3300021507_000104-3300021507-Ga0190316_10029764

Quality

82.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 149-262_298-308
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pk8A00 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.70 49.0 5.56e-01 87.2% 94.7%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.69 64.0 6.25e-01 100.0% 100.0%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.65 61.0 4.50e-01 100.0% 57.4%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.64 56.0 5.76e-01 99.2% 97.5%
1lxmA04 2.60.40.1380 Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 0.54 30.0 3.59e-01 97.6% 84.2%
1k25B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 43.0 3.26e-01 88.0% 95.0%
5ngjA01 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 4.01e-01 98.4% 97.6%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 36.0 3.48e-01 71.2% 81.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949155 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.81 78.0 5.87e-01 100.0% 57.4%
4313471 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.79 75.0 5.46e-01 100.0% 51.0%
2968064 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.71 67.0 4.74e-01 100.0% 58.1%
5080806 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.71 66.0 4.98e-01 100.0% 59.6%
11367 2485.3.1.6 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 0.70 49.0 5.56e-01 87.2% 94.7%
1005479 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.69 65.0 4.59e-01 100.0% 59.1%
4306281 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.69 43.0 4.87e-01 92.8% 82.1%
3090875 2485.3.1.14 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.67 63.0 4.63e-01 100.0% 62.0%
4942973 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.67 43.0 3.79e-01 91.2% 45.0%
4988094 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.67 63.0 4.87e-01 100.0% 60.8%
4994471 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.67 41.0 4.59e-01 88.8% 78.9%
2989340 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.67 62.0 4.51e-01 99.2% 55.9%
4526172 3464.1.1.1 extended segments › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › vATP-synt_E 0.66 40.0 3.49e-01 89.6% 40.5%
4113623 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.65 40.0 3.52e-01 90.4% 42.8%
4208534 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.64 42.0 4.39e-01 91.2% 72.2%
2989372 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.64 60.0 4.42e-01 100.0% 53.3%
4036496 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.64 41.0 4.07e-01 91.2% 62.5%
4638799 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.60 40.0 4.09e-01 90.4% 68.0%
3864279 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.53 36.0 3.78e-01 99.2% 74.8%
3498258 300.1.1.2 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.52 38.0 3.63e-01 100.0% 64.7%
D2 medium residues 46-57_86-148_266-295
PDB
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e0zA01 3.30.2400.20 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.86 64.0 6.37e-01 100.0% 74.8%
6i9gA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.75 70.0 5.84e-01 100.0% 76.3%
3dktA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.74 69.0 5.78e-01 100.0% 76.3%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 43.0 4.49e-01 94.3% 67.4%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.69 43.0 3.92e-01 100.0% 46.4%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.68 51.0 4.79e-01 96.2% 63.8%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.67 37.0 3.95e-01 88.6% 60.2%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.66 44.0 4.54e-01 86.7% 72.0%
3udcA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 39.0 4.20e-01 93.3% 73.9%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 35.0 3.55e-01 94.3% 54.8%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 35.0 3.53e-01 94.3% 56.3%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 32.0 3.61e-01 86.7% 67.1%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.59 42.0 4.22e-01 100.0% 73.3%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 31.0 3.54e-01 88.6% 67.5%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 34.0 3.66e-01 91.4% 65.6%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 36.0 3.59e-01 94.3% 58.7%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.58 44.0 4.07e-01 93.3% 60.8%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.90e-01 94.3% 61.2%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.43e-01 95.2% 58.6%
2gysA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 3.52e-01 86.7% 67.4%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 34.0 3.56e-01 96.2% 66.7%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 33.0 3.40e-01 91.4% 60.6%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 30.0 3.35e-01 91.4% 67.5%
7d58G01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.54 37.0 4.12e-01 93.3% 98.7%
7l0jB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 30.0 3.22e-01 82.9% 61.8%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 40.0 4.43e-01 95.2% 97.7%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.52 32.0 3.94e-01 82.9% 100.0%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 32.0 3.42e-01 82.9% 71.6%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.52 45.0 3.82e-01 96.2% 95.4%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 30.0 3.18e-01 97.1% 65.2%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.61e-01 82.9% 72.2%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.86e-01 96.2% 73.6%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.50 39.0 3.72e-01 83.8% 100.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949155 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.92 88.0 6.27e-01 100.0% 83.4%
3026399 3555.1.1.1 a+b three layers › Major capsid protein GP7 › Major capsid protein GP7 › Major capsid protein GP7 › GP7 0.90 85.0 5.73e-01 100.0% 55.8%
3965498 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.87 84.0 5.66e-01 100.0% 85.5%
5081487 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.87 82.0 5.86e-01 100.0% 91.6%
4241362 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.84 78.0 5.54e-01 100.0% 84.4%
3946670 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.84 78.0 5.62e-01 100.0% 80.4%
2538948 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.82 77.0 5.40e-01 100.0% 81.9%
2989289 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 73.0 5.05e-01 100.0% 80.8%
2989372 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 72.0 5.06e-01 100.0% 81.2%
4890673 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.77 72.0 4.85e-01 100.0% 79.4%
2989340 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.76 70.0 4.91e-01 100.0% 80.3%
194954 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.76 72.0 5.34e-01 100.0% 83.9%
2831773 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.75 70.0 5.10e-01 100.0% 80.5%
2724409 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.74 69.0 5.05e-01 100.0% 80.8%
2842229 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.74 68.0 4.59e-01 100.0% 82.2%
4955362 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.73 69.0 5.13e-01 100.0% 86.3%
3603036 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.72 68.0 4.96e-01 100.0% 84.3%
3603456 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.70 40.0 4.31e-01 91.4% 65.6%
3885839 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 37.0 3.85e-01 92.4% 56.0%
3822456 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.66 42.0 4.17e-01 94.3% 60.9%
3449841 310.3.1.14 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › DUF7049 0.66 44.0 4.64e-01 96.2% 76.6%
3594294 872.3.1.5 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.65 55.0 5.52e-01 100.0% 90.5%
3186484 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.65 52.0 5.56e-01 89.5% 97.8%
3588078 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.65 47.0 5.01e-01 100.0% 88.9%
3517977 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.64 35.0 3.96e-01 93.3% 68.8%
3834353 1075.4.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.64 40.0 4.09e-01 94.3% 62.9%
5011908 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.63 57.0 4.34e-01 100.0% 82.5%
3827396 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 40.0 4.01e-01 95.2% 61.8%
3964886 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.62 51.0 4.67e-01 94.3% 66.4%
3306490 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.62 40.0 3.99e-01 95.2% 61.8%
4941817 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 39.0 3.94e-01 92.4% 62.4%
3399158 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.60 36.0 3.68e-01 88.6% 61.0%
4048260 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.59 45.0 3.97e-01 93.3% 54.8%
3705145 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.58 52.0 4.36e-01 99.0% 94.4%
4952430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 40.0 4.00e-01 96.2% 67.3%
3803575 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.56 31.0 3.80e-01 91.4% 100.0%
5004179 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 35.0 3.81e-01 90.5% 77.6%
4043299 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.55 44.0 4.35e-01 87.6% 93.0%
4596504 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.54 45.0 3.74e-01 92.4% 53.2%
3846399 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 34.0 3.26e-01 95.2% 56.7%
3585212 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.51 44.0 3.52e-01 96.2% 59.1%
4311026 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 44.0 4.19e-01 96.2% 84.8%
4447560 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 39.0 3.98e-01 96.2% 83.8%
4290251 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 38.0 3.98e-01 96.2% 90.5%
3202886 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 44.0 3.72e-01 97.1% 72.8%