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IMGVR_UViG_3300021507_000104-3300021507-Ga0190316_10029767
Arc-VirIMGVR_UViG_3300021507_000104-3300021507-Ga0190316_10029767
Identity
- Kingdom:
- archaea
Quality
71.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 157-162_166-232
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nqiD00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.67 | 46.0 | 3.29e-01 | 72.6% | 78.0% |
| 1vluA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.65 | 54.0 | 3.77e-01 | 94.5% | 66.1% |
| 4ikmA02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 53.0 | 4.97e-01 | 100.0% | 89.2% |
| 6vbkB02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 48.0 | 4.78e-01 | 86.3% | 89.6% |
| 4eeiA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.60 | 45.0 | 4.24e-01 | 82.2% | 83.7% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.59 | 47.0 | 4.31e-01 | 86.3% | 71.1% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.58 | 30.0 | 3.04e-01 | 82.2% | 48.7% |
| 2bbrA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.58 | 42.0 | 4.01e-01 | 79.5% | 86.5% |
| 3hl0A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.57 | 44.0 | 3.36e-01 | 86.3% | 69.1% |
| 4h2uD00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.57 | 43.0 | 4.26e-01 | 84.9% | 98.7% |
| 3f44A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 3.40e-01 | 95.9% | 38.6% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 44.0 | 3.74e-01 | 87.7% | 63.9% |
| 2n5hA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.55 | 43.0 | 4.11e-01 | 87.7% | 91.1% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.55 | 39.0 | 3.88e-01 | 75.3% | 98.7% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 39.0 | 4.17e-01 | 76.7% | 95.4% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.54 | 43.0 | 4.05e-01 | 89.0% | 79.3% |
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.53 | 41.0 | 4.23e-01 | 100.0% | 94.1% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.52 | 38.0 | 3.31e-01 | 82.2% | 80.9% |
| 6z74C02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.52 | 40.0 | 3.18e-01 | 83.6% | 56.6% |
| 2fnoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 38.0 | 3.06e-01 | 78.1% | 71.0% |
| 2b3wA00 | 1.10.357.40 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like | 0.51 | 41.0 | 3.29e-01 | 93.2% | 45.2% |
| 1dysA00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.50 | 38.0 | 2.48e-01 | 82.2% | 36.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943189 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.71 | 33.0 | 3.76e-01 | 80.8% | 56.4% |
| 1544881 | 632.2.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA-like | 0.67 | 47.0 | 5.19e-01 | 71.2% | 96.4% |
| 4133737 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.67 | 55.0 | 4.05e-01 | 90.4% | 50.5% |
| 3938558 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.65 | 49.0 | 4.64e-01 | 82.2% | 66.7% |
| 3251304 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.65 | 52.0 | 4.57e-01 | 89.0% | 95.5% |
| 3518206 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.64 | 51.0 | 4.17e-01 | 91.8% | 77.3% |
| 4176750 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.64 | 52.0 | 3.96e-01 | 93.2% | 41.1% |
| 3624170 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.63 | 51.0 | 4.63e-01 | 89.0% | 97.0% |
| 4270013 | 7582.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD | 0.63 | 54.0 | 4.07e-01 | 94.5% | 43.4% |
| 4601619 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.63 | 52.0 | 4.08e-01 | 94.5% | 46.5% |
| 4094864 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.62 | 52.0 | 3.99e-01 | 94.5% | 45.4% |
| 4927256 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.61 | 50.0 | 3.88e-01 | 93.2% | 43.4% |
| 5069358 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.60 | 46.0 | 4.49e-01 | 84.9% | 98.8% |
| 4131324 | 2004.1.1.470 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C | 0.60 | 47.0 | 2.66e-01 | 87.7% | 24.4% |
| 4159704 | 7582.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 | 0.60 | 48.0 | 3.79e-01 | 94.5% | 42.7% |
| 3977998 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.60 | 45.0 | 3.53e-01 | 82.2% | 79.4% |
| 4927854 | 5069.1.1.44 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › CopD | 0.59 | 43.0 | 3.50e-01 | 82.2% | 81.9% |
| 4940598 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.58 | 40.0 | 4.04e-01 | 72.6% | 96.0% |
| 3185713 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.58 | 47.0 | 4.04e-01 | 91.8% | 71.7% |
| 3788700 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.57 | 45.0 | 3.08e-01 | 89.0% | 96.0% |
| 3174746 | 101.1.4.64 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › SRP1_TIP1 | 0.57 | 44.0 | 4.60e-01 | 84.9% | 100.0% |
| 3232876 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.56 | 40.0 | 3.71e-01 | 76.7% | 82.1% |
| 3437969 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 41.0 | 3.98e-01 | 79.5% | 85.5% |
| 3376984 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.55 | 42.0 | 2.66e-01 | 84.9% | 76.1% |
| 5012790 | 7076.1.1.0 ↗ | 0.55 | 40.0 | 3.96e-01 | 76.7% | 96.0% | |
| 3255283 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.54 | 43.0 | 2.81e-01 | 93.2% | 32.0% |
| 4062262 | 304.8.1.65 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446 | 0.54 | 45.0 | 3.65e-01 | 95.9% | 56.7% |
| 4527485 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.52 | 39.0 | 2.98e-01 | 80.8% | 78.3% |
| 5064233 | 7523.1.1.27 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › NMT1_2 | 0.52 | 41.0 | 2.74e-01 | 89.0% | 48.5% |
| 3602542 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 40.0 | 2.81e-01 | 91.8% | 26.1% |
| 4943230 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.50 | 42.0 | 4.03e-01 | 98.6% | 82.2% |