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IMGVR_UViG_3300021507_000111-3300021507-Ga0190316_100062031
Arc-VirIMGVR_UViG_3300021507_000111-3300021507-Ga0190316_100062031
Identity
- Kingdom:
- archaea
Quality
86.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-100
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m9mA00 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 49.0 | 3.56e-01 | 100.0% | 28.1% |
| 4ruvA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.68 | 59.0 | 4.72e-01 | 100.0% | 61.3% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.68 | 58.0 | 4.56e-01 | 100.0% | 62.6% |
| 6i1cA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 56.0 | 4.50e-01 | 100.0% | 61.1% |
| 1nw2A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 56.0 | 4.53e-01 | 100.0% | 62.9% |
| 4cw9B00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 55.0 | 4.47e-01 | 100.0% | 62.5% |
| 3qfmA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.64 | 52.0 | 3.47e-01 | 100.0% | 82.6% |
| 2wxwA02 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.64 | 55.0 | 3.73e-01 | 100.0% | 61.8% |
| 2nbsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 52.0 | 4.19e-01 | 100.0% | 57.8% |
| 2l6cA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 53.0 | 4.36e-01 | 100.0% | 62.5% |
| 2diyA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 50.0 | 4.17e-01 | 100.0% | 60.4% |
| 1pkhB00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.62 | 52.0 | 3.70e-01 | 98.1% | 56.6% |
| 2zdjA00 | 3.10.450.450 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 43.0 | 4.02e-01 | 100.0% | 57.4% |
| 4lq6A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.62 | 50.0 | 3.39e-01 | 94.2% | 33.8% |
| 6lyxA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 50.0 | 4.07e-01 | 100.0% | 56.4% |
| 1ovnB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 50.0 | 3.98e-01 | 100.0% | 61.8% |
| 2xzmU00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.61 | 48.0 | 3.81e-01 | 94.2% | 58.1% |
| 1wraA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 50.0 | 3.22e-01 | 100.0% | 98.0% |
| 4rn7A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.61 | 50.0 | 3.45e-01 | 94.2% | 32.8% |
| 6g62A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 50.0 | 3.98e-01 | 100.0% | 60.0% |
| 1u6tA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 50.0 | 3.92e-01 | 100.0% | 61.2% |
| 1senA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 46.0 | 3.67e-01 | 100.0% | 53.0% |
| 1bjxA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 48.0 | 3.92e-01 | 100.0% | 54.5% |
| 3apoA06 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 47.0 | 3.85e-01 | 100.0% | 62.8% |
| 1z9hA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 47.0 | 4.26e-01 | 100.0% | 77.5% |
| 3qs2A00 | 2.60.40.3290 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA | 0.58 | 46.0 | 3.29e-01 | 92.3% | 90.2% |
| 4au2B01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.57 | 45.0 | 3.18e-01 | 100.0% | 57.0% |
| 1gz0F01 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.57 | 43.0 | 3.77e-01 | 86.5% | 62.8% |
| 1ttzA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 45.0 | 4.16e-01 | 100.0% | 76.0% |
| 4yokA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.56 | 33.0 | 2.71e-01 | 100.0% | 33.0% |
| 1xezA01 | 3.30.110.130 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain | 0.55 | 44.0 | 3.85e-01 | 100.0% | 58.0% |
| 6vu9A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 43.0 | 2.90e-01 | 100.0% | 24.1% |
| 2mygA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 43.0 | 3.74e-01 | 100.0% | 66.0% |
| 1dihA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 46.0 | 3.73e-01 | 100.0% | 75.0% |
| 1vm6A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 45.0 | 3.97e-01 | 100.0% | 68.7% |
| 1p9lA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 44.0 | 3.62e-01 | 100.0% | 76.6% |
| 1a31A02 | 2.170.11.10 | Mainly Beta › Beta Complex › DNA Topoisomerase I; domain 2 › DNA Topoisomerase I, domain 2 | 0.52 | 41.0 | 3.39e-01 | 100.0% | 45.0% |
| 3a43A01 | 3.30.2320.50 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.52 | 41.0 | 3.61e-01 | 88.5% | 63.3% |
| 3c6vA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.51 | 41.0 | 3.18e-01 | 100.0% | 71.3% |
| 1vw4400 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 42.0 | 3.23e-01 | 100.0% | 44.2% |
| 3qavA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 40.0 | 3.68e-01 | 100.0% | 79.7% |
| 4hz4A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 40.0 | 3.60e-01 | 100.0% | 73.8% |
| 3cbuA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 39.0 | 3.62e-01 | 98.1% | 72.4% |
| 2hraA01 | 3.40.30.70 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.50 | 41.0 | 3.48e-01 | 100.0% | 55.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3956943 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.72 | 53.0 | 3.81e-01 | 100.0% | 27.3% |
| 1414923 | 59.1.4.2 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 | 0.69 | 59.0 | 4.01e-01 | 100.0% | 25.6% |
| 4862955 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.68 | 39.0 | 2.85e-01 | 100.0% | 20.1% |
| 3739216 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.66 | 56.0 | 4.53e-01 | 100.0% | 58.1% |
| 4024339 | 2485.1.1.93 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like_DJC16_2nd | 0.65 | 56.0 | 4.43e-01 | 100.0% | 54.5% |
| 4012984 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.64 | 54.0 | 4.30e-01 | 100.0% | 53.9% |
| 3063008 | 6081.1.1.1 ↗ | a+b two layers › Pro-domain of Hemolysin hlyA › Pro-domain of Hemolysin hlyA › Pro-domain of Hemolysin hlyA › Hemolysin_N | 0.63 | 45.0 | 3.71e-01 | 80.8% | 88.7% |
| 3268145 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.63 | 53.0 | 4.28e-01 | 100.0% | 50.9% |
| 3932112 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.63 | 53.0 | 4.25e-01 | 100.0% | 53.6% |
| 3270085 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.61 | 49.0 | 4.12e-01 | 100.0% | 60.0% |
| 3829837 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.60 | 51.0 | 4.05e-01 | 96.2% | 74.5% |
| 3621495 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 49.0 | 4.04e-01 | 100.0% | 64.5% |
| 3391316 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 49.0 | 4.10e-01 | 100.0% | 57.1% |
| 3194096 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.60 | 45.0 | 3.69e-01 | 84.6% | 54.3% |
| 3419356 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.60 | 49.0 | 3.84e-01 | 100.0% | 49.2% |
| 3291339 | 2485.1.1.56 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rng_hyd_C | 0.60 | 50.0 | 4.18e-01 | 100.0% | 52.0% |
| 3941737 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.59 | 49.0 | 4.16e-01 | 100.0% | 95.8% |
| 4346934 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.59 | 47.0 | 3.71e-01 | 90.4% | 61.7% |
| 3970390 | 301.1.1.5 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › SpoU_sub_bind | 0.59 | 45.0 | 4.00e-01 | 86.5% | 66.3% |
| 3609846 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.58 | 44.0 | 3.53e-01 | 86.5% | 45.2% |
| 4155570 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.58 | 48.0 | 4.03e-01 | 100.0% | 58.0% |
| 3212960 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.58 | 48.0 | 3.86e-01 | 100.0% | 58.3% |
| 5015261 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.58 | 46.0 | 3.19e-01 | 100.0% | 99.1% |
| 2720814 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.58 | 48.0 | 3.98e-01 | 100.0% | 66.0% |
| 3216096 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.57 | 47.0 | 3.76e-01 | 100.0% | 56.7% |
| 4012811 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.57 | 48.0 | 2.99e-01 | 100.0% | 43.4% |
| 4646646 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.56 | 42.0 | 3.61e-01 | 86.5% | 49.5% |
| 3646203 | 301.13.1.4 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Tubulin | 0.55 | 40.0 | 3.55e-01 | 82.7% | 70.6% |
| 3702777 | 2485.1.1.18 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SH3BGR | 0.54 | 43.0 | 3.61e-01 | 100.0% | 66.4% |
| 3854647 | 206.1.3.41 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter | 0.53 | 47.0 | 2.64e-01 | 100.0% | 12.1% |
| 4029574 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 39.0 | 3.39e-01 | 86.5% | 67.4% |
| 5011378 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 42.0 | 3.90e-01 | 100.0% | 70.0% |
| 4272071 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.52 | 44.0 | 3.00e-01 | 100.0% | 57.6% |
| 3611878 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.51 | 44.0 | 2.86e-01 | 100.0% | 46.8% |
| 4166163 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.51 | 43.0 | 2.95e-01 | 100.0% | 55.8% |
| 4483556 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.51 | 43.0 | 2.86e-01 | 100.0% | 51.2% |
| 4030512 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.51 | 40.0 | 2.84e-01 | 100.0% | 30.5% |
| 5062584 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.51 | 38.0 | 3.41e-01 | 86.5% | 65.9% |
| 3838973 | 885.1.1.1 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N | 0.51 | 38.0 | 2.98e-01 | 86.5% | 56.9% |
| 3594518 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.51 | 43.0 | 2.81e-01 | 100.0% | 46.4% |
| 3772155 | 73.1.1.6 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 | 0.51 | 40.0 | 2.80e-01 | 100.0% | 28.0% |
| 3938875 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 35.0 | 2.75e-01 | 75.0% | 96.2% |
| 3476564 | 2485.1.1.19 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 | 0.50 | 41.0 | 3.67e-01 | 100.0% | 71.4% |
| 3634941 | 2485.1.1.19 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 | 0.50 | 42.0 | 3.56e-01 | 100.0% | 62.1% |