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IMGVR_UViG_3300021509_000003-3300021509-Ga0190304_100009118

Arc-Vir

IMGVR_UViG_3300021509_000003-3300021509-Ga0190304_100009118

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-120
PDB
D2 high residues 159-307
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04586.23 best Peptidase_S78 26.3 1.10e-05 71.1% 40.6%
D3 high residues 517-543_561-782
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25209.3 best Phage_capsid_4 144.0 1.20e-41 88.8% 99.5%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.71 27.0 3.68e-01 90.4% 64.6%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.70 22.0 3.54e-01 91.2% 69.7%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.70 67.0 6.26e-01 100.0% 91.6%
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.68 40.0 5.22e-01 96.4% 100.0%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 19.0 3.08e-01 86.7% 66.7%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 20.0 2.97e-01 94.0% 59.5%
2wngA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 17.0 2.62e-01 90.4% 57.9%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 20.0 2.71e-01 91.6% 58.2%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.55 23.0 3.55e-01 96.8% 97.9%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 19.0 2.69e-01 91.6% 64.0%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 20.0 3.25e-01 90.8% 98.8%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.51 12.0 2.42e-01 91.2% 79.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977985 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.93 92.0 7.94e-01 100.0% 75.6%
5081698 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.87 85.0 7.77e-01 100.0% 93.1%
3164700 2485.3.1.15 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT 0.84 62.0 5.92e-01 75.1% 92.2%
2842229 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.77 74.0 6.35e-01 100.0% 91.2%
4890673 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.76 73.0 6.39e-01 100.0% 91.1%
2995325 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.76 72.0 6.22e-01 100.0% 89.7%
3944238 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.75 73.0 6.91e-01 100.0% 97.9%
3946670 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.75 70.0 6.75e-01 100.0% 87.6%
3949155 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.75 69.0 6.81e-01 100.0% 90.9%
3942344 2485.3.1.19 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 0.75 72.0 6.64e-01 100.0% 89.8%
4988094 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.74 67.0 6.67e-01 100.0% 91.4%
3075730 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.73 70.0 6.32e-01 100.0% 87.5%
3110786 2485.3.1.14 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.73 70.0 6.19e-01 100.0% 86.3%
2968064 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.73 70.0 6.17e-01 100.0% 92.2%
3090875 2485.3.1.14 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.73 70.0 6.47e-01 100.0% 93.8%
2899245 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.73 70.0 6.15e-01 100.0% 90.5%
3965498 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.73 70.0 6.31e-01 100.0% 91.7%
3088027 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.73 68.0 6.64e-01 100.0% 90.3%
4031028 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.73 65.0 6.26e-01 100.0% 82.9%
2651377 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.73 70.0 6.53e-01 100.0% 89.2%
3963274 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.73 67.0 5.84e-01 97.2% 98.6%
4313471 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.72 69.0 6.45e-01 100.0% 86.7%
2640765 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.72 69.0 6.02e-01 100.0% 93.5%
5081487 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.72 68.0 6.58e-01 99.6% 98.9%
2988313 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.71 68.0 6.57e-01 100.0% 90.8%
3583655 2485.3.1.5 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.71 68.0 6.19e-01 100.0% 90.9%
5082710 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.71 68.0 6.08e-01 100.0% 91.5%
2538948 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.71 67.0 6.28e-01 100.0% 88.6%
4929755 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.71 66.0 6.36e-01 100.0% 88.4%
4241362 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.71 67.0 6.31e-01 100.0% 91.2%
2989506 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.70 67.0 6.30e-01 100.0% 95.9%
2443966 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.70 65.0 5.48e-01 100.0% 84.6%
2989372 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.69 66.0 6.10e-01 100.0% 90.8%
4995674 2485.3.1.5 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.69 60.0 5.96e-01 100.0% 86.8%
4054495 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.69 20.0 3.20e-01 90.8% 63.0%
3603036 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.69 62.0 6.23e-01 100.0% 92.5%
2546181 2485.3.1.13 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp13-like 0.69 65.0 5.92e-01 100.0% 90.7%
3952452 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.69 65.0 6.15e-01 100.0% 88.1%
1877546 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.67 63.0 5.93e-01 100.0% 92.0%
2989356 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.67 63.0 5.99e-01 100.0% 92.2%
2806362 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.67 59.0 5.83e-01 100.0% 87.5%
4954548 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.67 63.0 6.11e-01 100.0% 93.8%
2989363 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.67 62.0 5.80e-01 100.0% 91.6%
2724409 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.66 60.0 5.87e-01 100.0% 88.7%
3587769 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.66 62.0 5.90e-01 100.0% 89.7%
4554638 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.66 19.0 2.95e-01 90.8% 58.1%
3277785 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.65 58.0 5.74e-01 100.0% 89.6%
4132858 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.65 19.0 2.95e-01 90.0% 59.0%
3588084 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.64 60.0 5.61e-01 100.0% 88.2%
3897495 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 19.0 2.66e-01 90.4% 49.2%
5083079 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.63 60.0 5.41e-01 100.0% 82.8%
3977525 2485.3.1.4 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 0.63 59.0 5.31e-01 100.0% 86.8%
3893730 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.62 19.0 2.93e-01 91.6% 64.0%
5083777 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.61 57.0 5.34e-01 100.0% 87.3%
3610546 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.59 27.0 3.99e-01 98.8% 100.0%
3959344 872.3.1.1 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.56 27.0 3.84e-01 91.6% 96.5%
5013821 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.55 23.0 3.22e-01 92.4% 76.7%
3723051 304.3.1.10 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA_PCA1 0.54 14.0 2.48e-01 90.4% 65.7%
4970968 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 21.0 3.05e-01 90.4% 79.6%
D4 medium residues 425-491
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 40.0 3.81e-01 98.5% 53.8%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 36.0 3.36e-01 76.1% 46.3%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 37.0 3.26e-01 76.1% 43.6%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 39.0 3.19e-01 77.6% 87.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 31.0 3.15e-01 86.6% 56.7%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 36.0 3.33e-01 73.1% 56.5%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 35.0 3.48e-01 86.6% 64.4%
1o3uA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 38.0 3.21e-01 79.1% 99.2%
5x2bD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 2.92e-01 98.5% 38.4%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.50 38.0 3.68e-01 100.0% 70.9%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 35.0 2.88e-01 76.1% 66.0%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.50 30.0 3.53e-01 76.1% 85.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978907 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.61 43.0 3.90e-01 73.1% 83.3%
3272680 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 36.0 3.82e-01 100.0% 65.0%
5057804 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.59 35.0 3.38e-01 74.6% 52.0%
3506054 601.15.1.0 alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) 0.58 41.0 3.63e-01 100.0% 52.6%
4954895 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.53 37.0 3.48e-01 76.1% 83.3%
3257764 192.29.1.171 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Sas10_Utp3 0.53 39.0 3.25e-01 77.6% 57.4%
3279350 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.53 36.0 3.42e-01 74.6% 60.0%
3965185 633.2.1.0 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.52 34.0 3.41e-01 94.0% 64.3%
3291425 191.1.1.44 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_43 0.52 44.0 3.63e-01 94.0% 96.7%
3668496 632.1.1.17 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Sas10_Utp3 0.52 38.0 3.32e-01 77.6% 63.0%
3930756 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.51 38.0 2.42e-01 82.1% 27.8%