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IMGVR_UViG_3300021509_000276-3300021509-Ga0190304_10038664

Arc-Vir

IMGVR_UViG_3300021509_000276-3300021509-Ga0190304_10038664

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 120-181
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.66 45.0 4.38e-01 72.6% 73.6%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 48.0 3.78e-01 77.4% 67.7%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 46.0 3.88e-01 80.6% 53.4%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.63 44.0 3.02e-01 79.0% 19.7%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.63 42.0 4.05e-01 79.0% 60.6%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 50.0 4.38e-01 90.3% 60.4%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 44.0 3.06e-01 75.8% 96.6%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 49.0 4.05e-01 90.3% 59.3%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 42.0 3.63e-01 74.2% 76.9%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.60 42.0 2.91e-01 75.8% 49.8%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 35.0 3.49e-01 95.2% 54.7%
1n7vA02 2.60.330.10 Mainly Beta › Sandwich › receptor-binding protein prd1-p2, domain 2 › receptor-binding protein prd1-p2, domain 2 0.59 48.0 3.88e-01 90.3% 78.9%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 49.0 3.93e-01 98.4% 59.6%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.60e-01 77.4% 78.8%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 49.0 3.62e-01 100.0% 58.3%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 44.0 2.83e-01 83.9% 77.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 41.0 4.13e-01 98.4% 73.8%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 47.0 4.19e-01 90.3% 76.7%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 38.0 3.89e-01 85.5% 72.4%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 45.0 4.08e-01 87.1% 80.0%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.57 40.0 3.16e-01 74.2% 48.6%
4isbA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.57 41.0 2.54e-01 77.4% 81.4%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.57 41.0 2.98e-01 80.6% 77.3%
1eucB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 46.0 3.62e-01 100.0% 51.6%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.56 43.0 2.75e-01 88.7% 93.9%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.56 42.0 3.98e-01 88.7% 68.8%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 45.0 3.76e-01 90.3% 90.7%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 38.0 3.78e-01 77.4% 81.2%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 45.0 3.23e-01 100.0% 45.2%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 38.0 3.21e-01 75.8% 85.1%
2zjrG00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.53 44.0 3.54e-01 100.0% 83.8%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.53 44.0 3.75e-01 100.0% 77.9%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 42.0 3.71e-01 96.8% 85.8%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.52 41.0 2.85e-01 90.3% 49.1%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 4.01e-01 96.8% 72.0%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.52 37.0 3.48e-01 79.0% 71.2%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.42e-01 100.0% 64.2%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.59e-01 80.6% 71.6%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.50 44.0 4.09e-01 100.0% 83.3%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.50 39.0 3.71e-01 88.7% 87.0%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.50 38.0 3.34e-01 88.7% 89.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3544935 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.67 59.0 4.90e-01 100.0% 70.0%
3267835 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.66 53.0 4.48e-01 88.7% 54.3%
3560901 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.66 52.0 4.98e-01 90.3% 77.3%
3342794 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.66 55.0 4.99e-01 98.4% 75.6%
3774738 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.66 52.0 4.78e-01 90.3% 68.2%
3857887 5094.1.1.11 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.66 52.0 4.97e-01 90.3% 77.3%
3905302 284.1.3.8 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.66 52.0 4.78e-01 90.3% 68.2%
3908855 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 42.0 4.40e-01 79.0% 74.5%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 48.0 4.90e-01 88.7% 86.2%
3574409 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.65 55.0 4.95e-01 100.0% 68.9%
4890599 1.1.7.80 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.65 36.0 3.58e-01 95.2% 50.0%
4147969 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.64 56.0 5.10e-01 100.0% 78.8%
3658323 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.64 54.0 4.67e-01 100.0% 79.0%
4534466 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 53.0 4.70e-01 98.4% 70.5%
3487368 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 50.0 4.95e-01 90.3% 90.8%
3896280 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.63 52.0 5.02e-01 100.0% 86.7%
3924597 330.16.1.0 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.63 53.0 5.20e-01 100.0% 88.6%
3802306 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.62 52.0 4.67e-01 100.0% 93.7%
3509521 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 51.0 3.96e-01 96.8% 78.7%
3213226 3075.1.1.0 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.61 47.0 4.66e-01 88.7% 83.1%
3506941 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 45.0 3.81e-01 98.4% 44.7%
3510560 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 48.0 3.32e-01 90.3% 82.1%
3769980 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.61 50.0 4.60e-01 100.0% 72.2%
3597823 330.16.1.3 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › CEP19 0.60 52.0 5.05e-01 100.0% 90.0%
3680555 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.60 47.0 4.21e-01 90.3% 62.1%
3408368 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.60 49.0 4.43e-01 98.4% 86.3%
4636242 101.35.1.37 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › FlgI 0.60 46.0 4.33e-01 93.5% 67.5%
4204892 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.60 50.0 4.05e-01 98.4% 64.6%
4377534 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.59 48.0 3.97e-01 98.4% 77.7%
4679171 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.59 48.0 4.11e-01 98.4% 84.3%
3936525 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 45.0 3.91e-01 88.7% 91.4%
4492432 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 47.0 3.93e-01 96.8% 80.0%
3408369 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.58 49.0 4.67e-01 98.4% 85.3%
5018480 1104.1.1.0 a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain 0.58 49.0 3.62e-01 100.0% 66.7%
4606103 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 47.0 3.98e-01 98.4% 76.7%
3943930 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.56 38.0 4.09e-01 75.8% 88.0%
4076432 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 45.0 3.77e-01 98.4% 83.2%
4015175 189.1.1.2 alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.55 42.0 2.89e-01 88.7% 77.4%
3937390 2484.8.1.0 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.55 46.0 3.10e-01 95.2% 23.1%
4388541 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.55 45.0 3.77e-01 98.4% 70.0%
4129233 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.55 44.0 3.74e-01 98.4% 67.5%
1891842 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.55 43.0 3.70e-01 90.3% 71.7%
3960667 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 43.0 3.46e-01 90.3% 74.8%
3989620 109.2.1.16 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like 0.54 45.0 2.85e-01 95.2% 83.8%
3606470 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 42.0 3.03e-01 90.3% 53.8%
3598773 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 41.0 2.91e-01 88.7% 48.6%
3940319 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 43.0 2.81e-01 98.4% 24.3%
3499681 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.53 40.0 3.55e-01 100.0% 55.9%
3627409 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.53 36.0 2.59e-01 72.6% 65.0%
3470076 861.1.1.0 a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.52 41.0 3.24e-01 88.7% 97.1%
3969097 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.52 35.0 3.73e-01 79.0% 90.0%
3702712 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 40.0 2.87e-01 90.3% 48.8%
4832853 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.34e-01 91.9% 60.0%
3838702 107.1.1.1 alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C 0.51 43.0 3.80e-01 98.4% 81.6%
3714092 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.51 36.0 2.49e-01 79.0% 46.1%
3682205 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 2.95e-01 82.3% 35.9%
4031565 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 41.0 2.86e-01 91.9% 97.3%
4945986 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.50 41.0 2.96e-01 98.4% 44.2%
4054903 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 44.0 2.48e-01 100.0% 37.1%