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IMGVR_UViG_3300021512_000014-3300021512-Ga0190303_10002875
Arc-VirIMGVR_UViG_3300021512_000014-3300021512-Ga0190303_10002875
Identity
- Kingdom:
- archaea
Quality
76.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 146-204
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13518.13 best | HTH_28 | 25.3 | 1.80e-05 | 88.1% | 59.6% |
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 70.0 | 6.70e-01 | 89.8% | 81.8% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.81 | 61.0 | 6.22e-01 | 91.5% | 83.9% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 58.0 | 5.67e-01 | 84.7% | 69.8% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 60.0 | 4.99e-01 | 83.1% | 54.5% |
| 1xwyA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.77 | 59.0 | 3.76e-01 | 81.4% | 24.2% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.76 | 64.0 | 5.00e-01 | 91.5% | 82.5% |
| 2e19A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 57.0 | 6.21e-01 | 89.8% | 100.0% |
| 6l25A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.75 | 58.0 | 3.71e-01 | 81.4% | 23.1% |
| 4ch7A01 | 1.10.10.2890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.75 | 57.0 | 4.55e-01 | 84.7% | 41.4% |
| 2pmiB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.75 | 62.0 | 4.21e-01 | 91.5% | 45.1% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.74 | 61.0 | 4.71e-01 | 91.5% | 78.2% |
| 1uhsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 57.0 | 5.99e-01 | 84.7% | 90.7% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 54.0 | 5.85e-01 | 83.1% | 100.0% |
| 2da4A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 56.0 | 5.43e-01 | 84.7% | 80.3% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.72 | 57.0 | 4.75e-01 | 88.1% | 90.6% |
| 1x2mA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 52.0 | 5.43e-01 | 79.7% | 87.0% |
| 1j5yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 55.0 | 5.38e-01 | 91.5% | 78.1% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.69 | 55.0 | 4.54e-01 | 89.8% | 90.0% |
| 2jrtA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 49.0 | 4.40e-01 | 86.4% | 53.5% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.68 | 56.0 | 5.07e-01 | 89.8% | 82.3% |
| 2ffhA03 | 1.10.260.30 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain | 0.68 | 57.0 | 4.74e-01 | 91.5% | 56.0% |
| 3hhsA01 | 1.20.1370.10 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain | 0.67 | 53.0 | 4.00e-01 | 86.4% | 36.6% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 53.0 | 5.15e-01 | 94.9% | 77.9% |
| 7ar7E01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.67 | 51.0 | 5.03e-01 | 83.1% | 77.8% |
| 1neqA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 39.0 | 3.65e-01 | 72.9% | 47.3% |
| 4cgrB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 56.0 | 3.96e-01 | 96.6% | 60.7% |
| 2v3cC03 | 1.10.260.30 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain | 0.66 | 55.0 | 4.69e-01 | 91.5% | 64.2% |
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 52.0 | 3.99e-01 | 88.1% | 65.0% |
| 1o3sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 52.0 | 4.96e-01 | 86.4% | 84.1% |
| 1kmiZ02 | 1.10.287.500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 45.0 | 3.43e-01 | 72.9% | 73.1% |
| 3r4kB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.79e-01 | 86.4% | 76.2% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 55.0 | 4.97e-01 | 93.2% | 93.8% |
| 2ia2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.68e-01 | 86.4% | 72.1% |
| 4edgA03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.64 | 46.0 | 4.60e-01 | 81.4% | 75.0% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 4.65e-01 | 91.5% | 73.1% |
| 3g3zA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 4.57e-01 | 89.8% | 71.9% |
| 1lfuP00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 53.0 | 4.78e-01 | 93.2% | 68.3% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 55.0 | 4.91e-01 | 100.0% | 89.4% |
| 6s6hA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 51.0 | 4.18e-01 | 89.8% | 59.6% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.63 | 49.0 | 4.30e-01 | 89.8% | 98.9% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 48.0 | 4.65e-01 | 83.1% | 92.4% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.61 | 35.0 | 3.34e-01 | 78.0% | 44.6% |
| 2fm8C01 | 1.10.4150.10 | Mainly Alpha › Orthogonal Bundle › SipA N-terminal domain-like › SipA N-terminal domain-like | 0.58 | 46.0 | 3.22e-01 | 86.4% | 49.5% |
| 2fgyA01 | 1.20.120.1310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain | 0.58 | 49.0 | 4.15e-01 | 100.0% | 60.7% |
| 4ev0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 50.0 | 4.62e-01 | 98.3% | 100.0% |
| 3zdrA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.57 | 49.0 | 3.40e-01 | 98.3% | 73.3% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 44.0 | 3.54e-01 | 89.8% | 48.5% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.57 | 44.0 | 4.15e-01 | 86.4% | 86.3% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 41.0 | 3.18e-01 | 78.0% | 48.1% |
| 4yifF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 47.0 | 3.67e-01 | 93.2% | 43.8% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.57 | 44.0 | 4.16e-01 | 86.4% | 90.5% |
| 3q23A04 | 6.10.140.1370 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 45.0 | 4.00e-01 | 93.2% | 64.8% |
| 1hw1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 4.34e-01 | 93.2% | 74.7% |
| 4ksaA02 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.56 | 44.0 | 3.42e-01 | 88.1% | 62.8% |
| 5jolA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 41.0 | 3.74e-01 | 83.1% | 81.7% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.26e-01 | 88.1% | 51.8% |
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.53 | 36.0 | 3.72e-01 | 78.0% | 80.0% |
| 4nnzA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 44.0 | 3.11e-01 | 96.6% | 74.7% |
| 3gzsA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 45.0 | 2.67e-01 | 100.0% | 11.9% |
| 5y6qB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.51 | 41.0 | 3.46e-01 | 91.5% | 85.8% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 40.0 | 3.36e-01 | 91.5% | 52.7% |
| 4i5lB01 | 1.10.238.230 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.50 | 41.0 | 3.59e-01 | 100.0% | 71.0% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4010377 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.92 | 76.0 | 6.91e-01 | 96.6% | 68.0% |
| 4952807 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.91 | 75.0 | 6.85e-01 | 100.0% | 69.3% |
| 5017697 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.90 | 73.0 | 7.34e-01 | 98.3% | 85.0% |
| 4009872 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.89 | 72.0 | 7.15e-01 | 98.3% | 83.3% |
| 4458965 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.89 | 71.0 | 6.34e-01 | 98.3% | 62.5% |
| 3502245 | 101.1.6.13 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_28 | 0.89 | 65.0 | 7.29e-01 | 86.4% | 100.0% |
| 3976496 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.87 | 71.0 | 6.89e-01 | 100.0% | 80.0% |
| 5003692 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.86 | 67.0 | 6.53e-01 | 94.9% | 75.4% |
| 4575492 | 101.1.6.14 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_29 | 0.84 | 67.0 | 6.54e-01 | 98.3% | 78.5% |
| 3973615 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.84 | 68.0 | 6.61e-01 | 98.3% | 80.0% |
| 3988724 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 67.0 | 6.75e-01 | 98.3% | 85.0% |
| 166741 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.83 | 70.0 | 5.58e-01 | 89.8% | 50.0% |
| 3283752 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.83 | 68.0 | 5.72e-01 | 88.1% | 54.7% |
| 4479119 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.82 | 68.0 | 7.09e-01 | 100.0% | 96.4% |
| 3424245 | 101.1.1.269 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 | 0.80 | 69.0 | 6.86e-01 | 93.2% | 100.0% |
| 4251816 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.79 | 58.0 | 5.66e-01 | 78.0% | 73.8% |
| 5038587 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.79 | 62.0 | 6.25e-01 | 96.6% | 85.0% |
| 2887751 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.78 | 68.0 | 6.60e-01 | 98.3% | 86.6% |
| 4507511 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.77 | 60.0 | 4.12e-01 | 83.1% | 26.8% |
| 4240426 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.77 | 64.0 | 4.45e-01 | 91.5% | 51.9% |
| 3534849 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.76 | 63.0 | 5.01e-01 | 89.8% | 52.2% |
| 3947986 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.76 | 66.0 | 6.64e-01 | 98.3% | 95.0% |
| 4944587 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.76 | 61.0 | 5.03e-01 | 88.1% | 95.2% |
| 3442515 | 101.1.1.269 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 | 0.76 | 69.0 | 6.18e-01 | 100.0% | 85.0% |
| 3277968 | 101.1.1.217 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C | 0.75 | 58.0 | 6.02e-01 | 84.7% | 89.1% |
| 5064133 | 101.8.1.0 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases | 0.75 | 60.0 | 4.19e-01 | 86.4% | 42.6% |
| 3462938 | 101.1.1.269 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 | 0.75 | 66.0 | 6.42e-01 | 98.3% | 90.8% |
| 3707222 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 59.0 | 6.12e-01 | 88.1% | 92.7% |
| 4992012 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 61.0 | 6.16e-01 | 89.8% | 95.0% |
| 3215991 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 59.0 | 5.72e-01 | 86.4% | 84.6% |
| 5000156 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 55.0 | 5.87e-01 | 81.4% | 96.0% |
| 3241028 | 101.1.2.649 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28730 | 0.73 | 61.0 | 5.38e-01 | 91.5% | 70.6% |
| 4436102 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 57.0 | 5.71e-01 | 84.7% | 93.3% |
| 1320273 | 101.1.10.11 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin | 0.72 | 58.0 | 4.75e-01 | 88.1% | 89.9% |
| 3973148 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.72 | 58.0 | 5.13e-01 | 89.8% | 95.5% |
| 5008115 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.71 | 49.0 | 5.43e-01 | 72.9% | 100.0% |
| 4955389 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.71 | 55.0 | 5.68e-01 | 83.1% | 100.0% |
| 3259221 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.71 | 59.0 | 5.87e-01 | 89.8% | 91.7% |
| 4976235 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 54.0 | 4.58e-01 | 83.1% | 50.0% |
| 3666279 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.71 | 52.0 | 5.34e-01 | 83.1% | 85.5% |
| 3993676 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.71 | 62.0 | 5.12e-01 | 98.3% | 78.1% |
| 3707503 | 101.1.10.20 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_2 | 0.71 | 55.0 | 4.36e-01 | 86.4% | 88.0% |
| 4097425 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.70 | 50.0 | 4.86e-01 | 74.6% | 72.3% |
| 4288489 | 4973.1.1.2 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaG_cat_HB | 0.70 | 55.0 | 5.14e-01 | 88.1% | 70.7% |
| 4040656 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.69 | 59.0 | 4.23e-01 | 96.6% | 47.8% |
| 4165729 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.69 | 57.0 | 4.06e-01 | 89.8% | 32.1% |
| 3638575 | 109.3.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 | 0.68 | 55.0 | 3.65e-01 | 93.2% | 36.7% |
| 4972388 | 101.1.2.949 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28863 | 0.68 | 52.0 | 3.70e-01 | 91.5% | 26.3% |
| 3402084 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 53.0 | 4.78e-01 | 88.1% | 65.9% |
| 3234027 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.65 | 53.0 | 5.31e-01 | 98.3% | 93.3% |
| 3269226 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.65 | 53.0 | 4.88e-01 | 89.8% | 84.0% |
| 4118498 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.65 | 49.0 | 4.39e-01 | 83.1% | 84.7% |
| 5076076 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.64 | 48.0 | 3.96e-01 | 84.7% | 41.7% |
| 4276274 | 198.2.1.1 ↗ | alpha arrays › Saposin-like › Bacteriocin AS-48-related › Bacteriocin AS-48-related › Bacteriocin_IId | 0.63 | 52.0 | 5.12e-01 | 98.3% | 100.0% |
| 4585616 | 129.1.1.1 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6PGD | 0.63 | 53.0 | 4.20e-01 | 100.0% | 52.2% |
| 3544328 | 3860.1.1.177 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › GRIP, Rab_bind | 0.62 | 43.0 | 3.28e-01 | 81.4% | 32.3% |
| 5068621 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.62 | 46.0 | 4.32e-01 | 81.4% | 69.3% |
| 4536901 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.60 | 52.0 | 3.81e-01 | 100.0% | 45.3% |
| 3628186 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.60 | 53.0 | 4.11e-01 | 100.0% | 72.3% |
| 5037454 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.59 | 47.0 | 4.18e-01 | 94.9% | 82.1% |
| 3197266 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.58 | 44.0 | 4.23e-01 | 83.1% | 95.7% |
| 5000613 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.58 | 45.0 | 4.04e-01 | 93.2% | 75.8% |
| 3964735 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.57 | 45.0 | 2.75e-01 | 88.1% | 15.7% |
| None | — | 0.57 | 42.0 | 2.90e-01 | 88.1% | 21.4% | |
| 5073861 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.56 | 48.0 | 3.97e-01 | 100.0% | 94.8% |
| 5051256 | 2007.1.14.35 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › DUF2229 | 0.55 | 44.0 | 3.35e-01 | 89.8% | 100.0% |
| 3270478 | 6155.1.1.4 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC | 0.55 | 43.0 | 3.60e-01 | 100.0% | 48.6% |
| 3617707 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.52 | 46.0 | 3.19e-01 | 100.0% | 33.7% |
| 5044421 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.51 | 39.0 | 3.65e-01 | 91.5% | 66.3% |
D2
high
residues 217-287
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fcyB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.81 | 65.0 | 6.77e-01 | 91.5% | 93.8% |
| 1s7zA01 | 1.20.120.780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr | 0.74 | 63.0 | 5.57e-01 | 93.0% | 98.0% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 61.0 | 5.43e-01 | 93.0% | 72.8% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 61.0 | 5.48e-01 | 91.5% | 80.6% |
| 2qbyB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 60.0 | 5.52e-01 | 91.5% | 81.3% |
| 3dplC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 53.0 | 5.04e-01 | 88.7% | 68.7% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 47.0 | 5.19e-01 | 76.1% | 89.3% |
| 3n0aA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.64 | 52.0 | 3.86e-01 | 91.5% | 34.8% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.59 | 43.0 | 4.08e-01 | 78.9% | 68.6% |
| 3ehmA03 | 1.20.120.840 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain | 0.58 | 42.0 | 3.57e-01 | 76.1% | 72.0% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.57 | 43.0 | 3.86e-01 | 94.4% | 56.4% |
| 7powA01 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.57 | 40.0 | 3.00e-01 | 74.6% | 30.8% |
| 2jpcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.37e-01 | 90.1% | 95.1% |
| 3ejnA03 | 1.20.120.840 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain | 0.55 | 41.0 | 3.63e-01 | 81.7% | 90.1% |
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.54 | 44.0 | 3.34e-01 | 95.8% | 92.3% |
| 1oltA02 | 1.10.10.920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 45.0 | 4.31e-01 | 95.8% | 90.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4380725 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.89 | 78.0 | 7.67e-01 | 100.0% | 89.3% |
| 3942599 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 63.0 | 6.11e-01 | 90.1% | 76.2% |
| 4109840 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.78 | 67.0 | 5.99e-01 | 94.4% | 82.0% |
| 2479 | 101.1.1.47 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Mu_2 | 0.78 | 63.0 | 6.19e-01 | 93.0% | 82.7% |
| 4962870 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.74 | 61.0 | 5.10e-01 | 91.5% | 66.7% |
| 1068638 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.70 | 47.0 | 5.19e-01 | 76.1% | 89.3% |
| 5042704 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 53.0 | 5.46e-01 | 87.3% | 93.8% |
| 3411866 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.67 | 57.0 | 4.76e-01 | 95.8% | 83.2% |
| 3480799 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.67 | 56.0 | 4.54e-01 | 93.0% | 53.3% |
| 4937657 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.67 | 50.0 | 3.18e-01 | 90.1% | 15.7% |
| 3645524 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.64 | 56.0 | 5.21e-01 | 97.2% | 77.8% |
| 1031092 | 3705.1.1.1 ↗ | alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › T2SS_PulS_OutS | 0.64 | 54.0 | 4.92e-01 | 95.8% | 74.7% |
| 4993593 | 198.1.1.27 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 | 0.63 | 52.0 | 5.09e-01 | 100.0% | 83.7% |
| 5022467 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.58 | 38.0 | 3.42e-01 | 98.6% | 47.0% |
| 4220382 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.58 | 39.0 | 3.44e-01 | 94.4% | 45.5% |
| 3688768 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.57 | 42.0 | 3.58e-01 | 78.9% | 82.5% |
| 3170157 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.57 | 38.0 | 3.39e-01 | 94.4% | 45.7% |
| 3839691 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.57 | 48.0 | 3.81e-01 | 93.0% | 91.0% |
| 5011601 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 36.0 | 3.56e-01 | 78.9% | 58.7% |
| 3714848 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.54 | 44.0 | 3.70e-01 | 90.1% | 73.6% |
| 3640245 | 109.58.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C | 0.52 | 43.0 | 3.54e-01 | 90.1% | 67.7% |
| 2557383 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.52 | 37.0 | 3.22e-01 | 77.5% | 56.9% |
| 3408417 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.52 | 43.0 | 3.11e-01 | 100.0% | 74.0% |
| 3637728 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.52 | 35.0 | 3.17e-01 | 70.4% | 51.4% |
| 4486707 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.52 | 44.0 | 4.18e-01 | 93.0% | 85.9% |
| 3421962 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.50 | 43.0 | 3.62e-01 | 97.2% | 83.2% |
| 3742839 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.50 | 36.0 | 3.36e-01 | 100.0% | 58.9% |
D3
high
residues 303-373_438-529
Domain cluster:
rep: NC_020866.1__YP_007676387.1__RHVG_00008__00008__D267-366_438-460
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bcoA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.79 | 76.0 | 6.69e-01 | 100.0% | 91.4% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.73 | 65.0 | 6.78e-01 | 96.3% | 100.0% |
| 7pikC01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.70 | 66.0 | 6.06e-01 | 99.4% | 95.2% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.63 | 24.0 | 3.75e-01 | 85.9% | 87.5% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.63 | 24.0 | 3.65e-01 | 84.0% | 84.6% |
| 1a8rA02 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.61 | 30.0 | 3.31e-01 | 93.9% | 54.4% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.61 | 28.0 | 3.18e-01 | 90.8% | 53.9% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 26.0 | 3.89e-01 | 98.2% | 96.9% |
| 2cg8C01 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.60 | 34.0 | 3.90e-01 | 95.7% | 75.6% |
| 3uxjA01 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.59 | 30.0 | 3.42e-01 | 93.9% | 62.7% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 29.0 | 3.59e-01 | 100.0% | 80.2% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.54 | 26.0 | 3.17e-01 | 93.9% | 68.9% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.52 | 38.0 | 3.34e-01 | 76.1% | 83.5% |
| 3cqyB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 29.0 | 2.85e-01 | 98.2% | 46.7% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942598 | 2484.1.1.219 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 | 0.86 | 83.0 | 7.23e-01 | 100.0% | 87.0% |
| 4259031 | 2484.1.1.219 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 | 0.84 | 80.0 | 7.58e-01 | 97.5% | 96.8% |
| 2887749 | 2484.1.1.219 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 | 0.83 | 79.0 | 6.87e-01 | 99.4% | 83.4% |
| 4632712 | 2484.1.1.219 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 | 0.82 | 79.0 | 7.17e-01 | 100.0% | 92.7% |
| 11137 | 2484.1.1.33 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_2 | 0.79 | 76.0 | 6.78e-01 | 100.0% | 94.4% |
| 5084008 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.75 | 71.0 | 6.86e-01 | 100.0% | 88.9% |
| 3955433 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.75 | 70.0 | 6.74e-01 | 96.9% | 90.0% |
| 3970062 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.74 | 69.0 | 6.59e-01 | 100.0% | 85.4% |
| 3986284 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.74 | 69.0 | 6.44e-01 | 100.0% | 81.0% |
| 3985938 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.74 | 70.0 | 6.52e-01 | 100.0% | 82.1% |
| 3985723 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.74 | 70.0 | 6.36e-01 | 100.0% | 78.0% |
| 4336164 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.73 | 68.0 | 6.54e-01 | 98.8% | 86.7% |
| 3283910 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 68.0 | 6.96e-01 | 97.5% | 100.0% |
| 4928272 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.73 | 67.0 | 6.91e-01 | 96.3% | 100.0% |
| 3588051 | 2484.1.1.202 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 | 0.73 | 68.0 | 6.55e-01 | 100.0% | 87.2% |
| 3602926 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.73 | 58.0 | 6.24e-01 | 95.1% | 93.8% |
| 3971375 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.73 | 69.0 | 6.53e-01 | 100.0% | 85.1% |
| 4957414 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.73 | 68.0 | 6.43e-01 | 96.9% | 84.3% |
| 3398365 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 54.0 | 4.74e-01 | 94.5% | 53.2% |
| 4008012 | 2484.1.1.202 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 | 0.73 | 67.0 | 6.36e-01 | 96.9% | 83.8% |
| 3588441 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.73 | 68.0 | 6.77e-01 | 97.5% | 95.2% |
| 4926839 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.73 | 67.0 | 6.73e-01 | 100.0% | 94.5% |
| 3982837 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.72 | 66.0 | 6.64e-01 | 96.3% | 93.3% |
| 3969957 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.72 | 65.0 | 6.12e-01 | 95.7% | 79.5% |
| 5039061 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 57.0 | 5.17e-01 | 90.8% | 62.9% |
| 3519322 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.72 | 67.0 | 6.28e-01 | 98.2% | 81.5% |
| 4929599 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.72 | 67.0 | 5.70e-01 | 97.5% | 65.4% |
| 4933551 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.71 | 58.0 | 6.11e-01 | 94.5% | 92.6% |
| 3914424 | 2484.1.1.242 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rva_4 | 0.71 | 68.0 | 5.92e-01 | 100.0% | 76.5% |
| 3588285 | 2484.1.1.202 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 | 0.71 | 68.0 | 6.28e-01 | 100.0% | 84.5% |
| 4927589 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.71 | 66.0 | 6.25e-01 | 97.5% | 93.7% |
| 5030453 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.71 | 64.0 | 5.54e-01 | 97.5% | 65.1% |
| 4099374 | 2484.1.1.202 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 | 0.71 | 66.0 | 6.40e-01 | 98.8% | 90.3% |
| 5059876 | 2484.1.1.117 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 | 0.70 | 67.0 | 6.51e-01 | 98.8% | 92.6% |
| 4567161 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.70 | 66.0 | 6.34e-01 | 100.0% | 94.6% |
| 5028784 | 2484.1.1.117 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 | 0.70 | 66.0 | 5.66e-01 | 98.2% | 69.2% |
| 5027917 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.70 | 64.0 | 5.52e-01 | 97.5% | 65.0% |
| 3952641 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.70 | 66.0 | 6.17e-01 | 99.4% | 82.6% |
| 4944877 | 2484.1.1.117 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 | 0.70 | 61.0 | 6.12e-01 | 95.1% | 90.3% |
| 4943224 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.70 | 61.0 | 6.07e-01 | 96.3% | 88.2% |
| 3925598 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.70 | 63.0 | 6.16e-01 | 98.8% | 88.0% |
| 5029192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.70 | 65.0 | 6.23e-01 | 96.9% | 95.0% |
| 4927805 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.70 | 63.0 | 6.44e-01 | 96.9% | 96.2% |
| 4141576 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.70 | 66.0 | 6.28e-01 | 100.0% | 95.1% |
| 4010375 | 2484.1.1.194 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 | 0.69 | 65.0 | 6.24e-01 | 98.2% | 86.5% |
| 5027953 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.69 | 65.0 | 6.16e-01 | 98.8% | 85.9% |
| 5052211 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.69 | 55.0 | 5.79e-01 | 82.8% | 94.7% |
| 4928281 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.69 | 63.0 | 5.46e-01 | 97.5% | 66.4% |
| 5006208 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.69 | 62.0 | 6.23e-01 | 100.0% | 92.1% |
| 4944586 | 2484.1.1.117 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 | 0.68 | 64.0 | 6.13e-01 | 98.2% | 87.8% |
| 3565215 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 60.0 | 5.85e-01 | 97.5% | 86.9% |
| 3274129 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 63.0 | 5.69e-01 | 100.0% | 86.7% |
| 5052885 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.66 | 55.0 | 4.83e-01 | 86.5% | 95.6% |
| 3252345 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.66 | 62.0 | 5.51e-01 | 100.0% | 83.6% |
| 5064316 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 62.0 | 6.15e-01 | 100.0% | 94.1% |
| 4992937 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.65 | 57.0 | 4.40e-01 | 92.6% | 70.1% |
| 5008722 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 57.0 | 4.49e-01 | 90.8% | 57.0% |
| 4312891 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 60.0 | 5.72e-01 | 98.2% | 85.4% |
| 4008870 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.65 | 57.0 | 4.20e-01 | 92.6% | 63.8% |
| 4009433 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 57.0 | 4.22e-01 | 92.0% | 67.0% |
| 5060820 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.63 | 55.0 | 3.91e-01 | 92.0% | 63.7% |
| 3190674 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 30.0 | 3.85e-01 | 97.5% | 78.9% |
| 3739406 | 330.1.1.9 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dcr1-like_dsRNA-bd_dom | 0.62 | 30.0 | 3.69e-01 | 98.2% | 70.5% |
| 5050956 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 59.0 | 4.56e-01 | 100.0% | 72.8% |
| 4819454 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.60 | 28.0 | 3.47e-01 | 100.0% | 67.6% |
| 3986558 | 2484.1.1.231 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C | 0.59 | 53.0 | 5.10e-01 | 94.5% | 96.1% |
| 4968414 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 50.0 | 4.85e-01 | 98.8% | 81.1% |
| 4968579 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 53.0 | 4.38e-01 | 95.1% | 59.3% |
| 3573772 | 2484.1.1.222 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 | 0.58 | 47.0 | 4.65e-01 | 85.3% | 95.9% |
| 3506831 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.54 | 24.0 | 3.40e-01 | 96.3% | 86.3% |
D4
high
residues 538-615
Domain cluster:
rep: CAKLQH020000078.1__CAH1097365.1__SAMEA5780036_04175__00002__D454-539
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09299.18 best | Mu-transpos_C | 32.4 | 1.00e-07 | 88.5% | 83.6% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 39.0 | 4.08e-01 | 87.2% | 62.3% |
| 1g29103 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.67 | 52.0 | 5.65e-01 | 84.6% | 100.0% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 46.0 | 4.93e-01 | 91.0% | 84.8% |
| 4tquS02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 49.0 | 5.28e-01 | 84.6% | 100.0% |
| 3v8uA04 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.64 | 44.0 | 3.67e-01 | 71.8% | 98.6% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 42.0 | 4.42e-01 | 87.2% | 75.7% |
| 2jngA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 40.0 | 4.03e-01 | 89.7% | 63.6% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 42.0 | 4.72e-01 | 88.5% | 91.7% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 41.0 | 4.12e-01 | 87.2% | 65.8% |
| 1g2bA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 34.0 | 3.79e-01 | 74.4% | 67.7% |
| 3j7yD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 41.0 | 4.09e-01 | 88.5% | 65.4% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 41.0 | 4.54e-01 | 87.2% | 88.3% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 41.0 | 4.42e-01 | 88.5% | 82.8% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.60 | 53.0 | 3.73e-01 | 98.7% | 49.6% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 46.0 | 4.67e-01 | 97.4% | 83.3% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.59 | 46.0 | 3.38e-01 | 85.9% | 49.8% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.59 | 34.0 | 3.62e-01 | 85.9% | 65.2% |
| 1x6gA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 40.0 | 3.99e-01 | 88.5% | 69.1% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.57 | 48.0 | 3.44e-01 | 93.6% | 52.2% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 39.0 | 4.08e-01 | 87.2% | 82.9% |
| 3zjyC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 41.0 | 4.24e-01 | 82.1% | 87.8% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 46.0 | 3.31e-01 | 97.4% | 48.2% |
| 2bjfA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.54 | 39.0 | 2.65e-01 | 78.2% | 88.4% |
| 2kcdA00 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.53 | 47.0 | 4.10e-01 | 100.0% | 65.8% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 43.0 | 3.18e-01 | 93.6% | 51.3% |
| 4epcA02 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 4.34e-01 | 94.9% | 94.4% |
| 3tdqA00 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.53 | 40.0 | 3.91e-01 | 83.3% | 81.4% |
| 5hqgA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 45.0 | 3.02e-01 | 98.7% | 87.7% |
| 3op2A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 40.0 | 3.44e-01 | 87.2% | 89.4% |
| 3nbxX04 | 2.40.128.430 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 35.0 | 3.22e-01 | 87.2% | 52.3% |
| 2d9xA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.42e-01 | 79.5% | 72.7% |
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.51 | 42.0 | 3.11e-01 | 92.3% | 62.4% |
| 1plsA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.40e-01 | 80.8% | 69.9% |
| 2vxtI00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 44.0 | 3.50e-01 | 96.2% | 73.1% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4299723 | 2.8.1.1 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C | 0.89 | 74.0 | 7.81e-01 | 98.7% | 97.1% |
| 3955444 | 2.8.1.1 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C | 0.83 | 66.0 | 7.16e-01 | 97.4% | 100.0% |
| 4632713 | 2.8.1.0 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C | 0.79 | 72.0 | 6.39e-01 | 100.0% | 72.7% |
| 5038340 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.69 | 40.0 | 4.15e-01 | 88.5% | 60.0% |
| 4003015 | 4.1.1.318 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26085 | 0.69 | 46.0 | 5.16e-01 | 88.5% | 89.8% |
| 4949848 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.68 | 38.0 | 4.34e-01 | 88.5% | 76.4% |
| 3399557 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 46.0 | 4.83e-01 | 89.7% | 78.6% |
| 3808737 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 37.0 | 4.10e-01 | 74.4% | 70.0% |
| 4680114 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.65 | 43.0 | 4.44e-01 | 88.5% | 72.0% |
| 3546309 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.64 | 44.0 | 4.50e-01 | 89.7% | 73.3% |
| 3484007 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 44.0 | 4.61e-01 | 89.7% | 78.6% |
| 3915732 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.64 | 44.0 | 4.26e-01 | 89.7% | 64.7% |
| 25836 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.64 | 44.0 | 4.55e-01 | 88.5% | 77.8% |
| 3929373 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.63 | 40.0 | 4.44e-01 | 88.5% | 83.3% |
| 2849853 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 43.0 | 4.59e-01 | 88.5% | 82.1% |
| 3505437 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 43.0 | 4.18e-01 | 88.5% | 64.7% |
| 3898952 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 43.0 | 4.39e-01 | 89.7% | 73.3% |
| 4001172 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.63 | 43.0 | 4.55e-01 | 89.7% | 80.0% |
| 3389432 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 42.0 | 4.35e-01 | 88.5% | 73.3% |
| 3529708 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 44.0 | 4.56e-01 | 97.4% | 78.7% |
| 3879172 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.61 | 42.0 | 4.57e-01 | 88.5% | 86.2% |
| 4018667 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.61 | 44.0 | 3.86e-01 | 96.2% | 51.3% |
| 3880325 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.61 | 44.0 | 4.61e-01 | 97.4% | 85.7% |
| 4664510 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.60 | 44.0 | 4.81e-01 | 100.0% | 93.8% |
| 5063004 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 41.0 | 4.46e-01 | 85.9% | 86.2% |
| 3494530 | 5.1.4.155 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 | 0.59 | 47.0 | 3.10e-01 | 85.9% | 27.3% |
| 3662319 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.59 | 40.0 | 4.02e-01 | 87.2% | 68.8% |
| 3385856 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.59 | 41.0 | 4.49e-01 | 88.5% | 92.1% |
| 4943586 | 243.6.1.12 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA | 0.58 | 45.0 | 4.48e-01 | 85.9% | 81.2% |
| 3342595 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.58 | 50.0 | 3.98e-01 | 100.0% | 98.8% |
| 4091533 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.58 | 44.0 | 4.59e-01 | 89.7% | 90.0% |
| 3453774 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.58 | 50.0 | 3.97e-01 | 100.0% | 86.4% |
| 4117297 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 36.0 | 3.83e-01 | 88.5% | 71.4% |
| 4550532 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.57 | 42.0 | 4.01e-01 | 88.5% | 66.7% |
| 3969959 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 48.0 | 4.65e-01 | 100.0% | 82.2% |
| 3838574 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.56 | 38.0 | 4.20e-01 | 84.6% | 98.2% |
| 3213122 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.56 | 37.0 | 3.41e-01 | 88.5% | 50.5% |
| 3243188 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.56 | 41.0 | 4.19e-01 | 89.7% | 81.3% |
| 3241890 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 37.0 | 3.48e-01 | 88.5% | 54.0% |
| 1263586 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 39.0 | 4.07e-01 | 87.2% | 80.6% |
| 4358722 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.55 | 40.0 | 3.63e-01 | 88.5% | 56.2% |
| 1263580 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.55 | 39.0 | 4.00e-01 | 87.2% | 77.3% |
| 4031519 | 3425.1.1.1 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH N-terminal domain › YycH N-terminal domain › YycH | 0.55 | 43.0 | 3.61e-01 | 97.4% | 47.6% |
| 3190384 | 511.1.1.2 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › PF27034 | 0.55 | 46.0 | 3.77e-01 | 94.9% | 66.0% |
| 3874175 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 41.0 | 3.52e-01 | 79.5% | 68.8% |
| 4933205 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.55 | 41.0 | 3.92e-01 | 89.7% | 68.9% |
| 3386839 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.54 | 37.0 | 3.00e-01 | 70.5% | 83.0% |
| 4528716 | 3784.1.1.0 ↗ | a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related | 0.54 | 34.0 | 3.13e-01 | 98.7% | 47.6% |
| 3552888 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 41.0 | 3.54e-01 | 80.8% | 72.5% |
| 3502483 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 2.92e-01 | 98.7% | 85.3% |
| 3823929 | 220.1.1.163 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 | 0.54 | 40.0 | 3.48e-01 | 79.5% | 60.8% |
| 3259482 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.71e-01 | 88.5% | 69.4% |
| 4196229 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.52 | 37.0 | 3.82e-01 | 88.5% | 82.9% |
D5
medium
residues 46-131
Domain cluster:
rep: MK801723.1__QDF17439.1__SEA_COEUR_21__00021__D21-83
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lhfA00 | 6.10.200.10 | Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox | 0.75 | 47.0 | 4.94e-01 | 88.4% | 69.6% |
| 2r3sB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 35.0 | 3.68e-01 | 86.0% | 55.6% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 36.0 | 3.67e-01 | 84.9% | 55.2% |
| 4a6dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 39.0 | 3.78e-01 | 88.4% | 55.3% |
| 4o5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 36.0 | 3.97e-01 | 87.2% | 70.4% |
| 1z6tA04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 40.0 | 4.03e-01 | 93.0% | 67.1% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 36.0 | 3.97e-01 | 88.4% | 75.0% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 45.0 | 4.02e-01 | 88.4% | 60.3% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.83e-01 | 90.7% | 72.6% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.52e-01 | 88.4% | 60.0% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.96e-01 | 93.0% | 75.9% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.96e-01 | 86.0% | 82.2% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.54 | 37.0 | 3.79e-01 | 84.9% | 74.1% |
| 3wrwA02 | 3.40.50.12030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain | 0.53 | 46.0 | 3.52e-01 | 100.0% | 84.1% |
| 3mczA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 39.0 | 2.87e-01 | 77.9% | 80.1% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.51e-01 | 89.5% | 58.0% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 29.0 | 3.05e-01 | 86.0% | 58.0% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.63e-01 | 94.2% | 63.8% |
| 2f2eA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.82e-01 | 97.7% | 76.9% |
| 1yyvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.50e-01 | 94.2% | 60.7% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 39.0 | 3.61e-01 | 84.9% | 65.8% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 45.0 | 3.86e-01 | 100.0% | 83.3% |
| 4jwoA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 38.0 | 3.33e-01 | 84.9% | 90.8% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950846 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.87 | 49.0 | 6.47e-01 | 87.2% | 98.0% |
| 2168161 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.85 | 49.0 | 6.08e-01 | 87.2% | 89.5% |
| 5047649 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.83 | 47.0 | 6.16e-01 | 87.2% | 100.0% |
| 4933561 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.81 | 47.0 | 5.83e-01 | 87.2% | 92.7% |
| 3278372 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.81 | 55.0 | 6.27e-01 | 98.8% | 92.3% |
| 3956825 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.79 | 43.0 | 5.44e-01 | 82.6% | 92.0% |
| 3951879 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.76 | 42.0 | 5.33e-01 | 81.4% | 94.0% |
| 4198222 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.76 | 52.0 | 5.72e-01 | 100.0% | 87.1% |
| 3942751 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.65 | 47.0 | 4.22e-01 | 88.4% | 55.0% |
| 4929990 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 36.0 | 3.47e-01 | 87.2% | 49.0% |
| 5001004 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.58 | 36.0 | 3.22e-01 | 87.2% | 45.0% |
| 5039585 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.57 | 41.0 | 4.09e-01 | 94.2% | 72.2% |
| 4101677 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.56 | 44.0 | 3.75e-01 | 87.2% | 52.6% |
| 5035978 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.56 | 43.0 | 3.38e-01 | 84.9% | 80.0% |
| 4088461 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 3.11e-01 | 70.9% | 67.1% |
| 4334333 | 101.1.9.1 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind | 0.54 | 45.0 | 3.78e-01 | 88.4% | 55.7% |
| 4977549 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.54 | 31.0 | 3.43e-01 | 81.4% | 70.0% |
| 4022000 | 101.1.2.79 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 | 0.53 | 30.0 | 3.26e-01 | 84.9% | 65.7% |
| 4961224 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.52 | 31.0 | 3.47e-01 | 81.4% | 74.3% |
| 3284457 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.52 | 44.0 | 3.14e-01 | 100.0% | 91.1% |
| 3499297 | 101.1.2.113 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 | 0.51 | 46.0 | 4.12e-01 | 100.0% | 99.2% |
| 3595789 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 38.0 | 2.29e-01 | 81.4% | 48.3% |
| 3785509 | 101.1.2.113 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 | 0.51 | 44.0 | 3.42e-01 | 100.0% | 84.9% |
D6
medium
residues 712-773
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.69 | 51.0 | 3.38e-01 | 77.4% | 86.1% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 46.0 | 4.52e-01 | 91.9% | 66.2% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 51.0 | 4.71e-01 | 80.6% | 76.9% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 38.0 | 3.45e-01 | 74.2% | 42.2% |
| 2vugA04 | 1.20.58.2250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 54.0 | 4.88e-01 | 96.8% | 88.9% |
| 1on2A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.65 | 47.0 | 4.77e-01 | 82.3% | 76.2% |
| 2dsjA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.64 | 50.0 | 4.94e-01 | 87.1% | 88.1% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 48.0 | 4.16e-01 | 82.3% | 60.0% |
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 46.0 | 4.47e-01 | 79.0% | 80.6% |
| 1hssA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.64 | 49.0 | 4.13e-01 | 85.5% | 56.8% |
| 2l37A00 | 6.10.250.890 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 38.0 | 4.39e-01 | 75.8% | 88.4% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.62 | 48.0 | 4.40e-01 | 87.1% | 70.6% |
| 3c1dA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 31.0 | 3.58e-01 | 72.6% | 65.2% |
| 6vg5A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 49.0 | 4.65e-01 | 100.0% | 72.8% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 45.0 | 4.09e-01 | 79.0% | 78.6% |
| 4f92B10 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.60 | 45.0 | 3.53e-01 | 82.3% | 48.3% |
| 5yixA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.60 | 52.0 | 3.31e-01 | 100.0% | 22.8% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.59 | 36.0 | 3.77e-01 | 74.2% | 67.3% |
| 2r4gA02 | 1.10.10.1970 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like | 0.58 | 48.0 | 4.79e-01 | 100.0% | 90.6% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.56 | 46.0 | 3.76e-01 | 95.2% | 47.2% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 47.0 | 4.51e-01 | 95.2% | 88.9% |
| 6bs3B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 2.73e-01 | 90.3% | 16.6% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 4.24e-01 | 96.8% | 86.7% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 3.58e-01 | 91.9% | 50.4% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.53 | 41.0 | 3.66e-01 | 88.7% | 90.7% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.52 | 34.0 | 3.59e-01 | 71.0% | 72.7% |
| 2qenA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.79e-01 | 83.9% | 100.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.69 | 50.0 | 4.47e-01 | 79.0% | 55.3% |
| 3663702 | 143.1.1.5 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › VIN3_C | 0.69 | 48.0 | 4.64e-01 | 72.6% | 64.3% |
| 3431353 | 1128.1.1.10 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › VIN3_C | 0.67 | 46.0 | 4.44e-01 | 71.0% | 64.3% |
| 3578718 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.66 | 56.0 | 4.91e-01 | 98.4% | 66.3% |
| 4296289 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.65 | 53.0 | 3.71e-01 | 90.3% | 48.3% |
| 4066056 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.63 | 55.0 | 4.55e-01 | 100.0% | 56.5% |
| 3682846 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.63 | 45.0 | 2.80e-01 | 79.0% | 12.4% |
| 3802549 | 109.4.1.1519 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 | 0.62 | 49.0 | 3.09e-01 | 91.9% | 15.9% |
| 4634964 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.61 | 54.0 | 4.52e-01 | 100.0% | 59.1% |
| 4209030 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.60 | 53.0 | 4.35e-01 | 100.0% | 57.0% |
| 4605138 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.60 | 53.0 | 4.33e-01 | 100.0% | 56.5% |
| 3348850 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 3.77e-01 | 71.0% | 73.8% |
| 3456352 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.59 | 52.0 | 3.15e-01 | 98.4% | 19.0% |
| 4124492 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.59 | 51.0 | 4.23e-01 | 100.0% | 56.5% |
| 3661933 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.58 | 49.0 | 3.07e-01 | 100.0% | 36.9% |
| 3484156 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.58 | 50.0 | 4.46e-01 | 98.4% | 67.8% |
| 4211999 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.57 | 50.0 | 3.97e-01 | 100.0% | 48.5% |
| 3668031 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.56 | 47.0 | 2.80e-01 | 100.0% | 25.2% |
| 3808273 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.54 | 39.0 | 2.47e-01 | 80.6% | 16.5% |
| 3633 | 4218.1.1.1 ↗ | alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH | 0.54 | 42.0 | 3.66e-01 | 96.8% | 53.3% |