IMGVR_UViG_3300021513_000090-3300021513-Ga0190315_100025310

Arc-Vir

Identity

77.4 mean pLDDT

View cluster (19 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-126

PDB

Domain cluster: rep: IMGVR_UViG_3300020466_000318-3300020466-Ga0211714_100135571__D55-80_94-188

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rh3A00	1.10.1220.190	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › VirC2, RHH domain	0.59	50.0	5.14e-01	100.0%	97.5%
3kcuD00	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.54	40.0	3.21e-01	76.8%	89.1%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4373529	101.1.11.43 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › TraY	0.75	57.0	6.27e-01	98.4%	99.0%
2869	101.1.11.8 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › VirC2	0.59	50.0	5.14e-01	100.0%	97.5%
3608731	3949.1.1.0 ↗	alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	0.56	30.0	3.88e-01	92.8%	92.9%
4588555	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	38.0	3.15e-01	70.4%	60.9%
3718386	189.1.1.1 ↗	alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RasGAP	0.54	40.0	2.88e-01	76.0%	98.1%
None	—		0.52	38.0	2.48e-01	76.8%	21.4%
3524768	109.4.1.562 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CANIN	0.51	39.0	2.83e-01	83.2%	34.7%
3506621	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.50	36.0	3.38e-01	97.6%	58.7%