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IMGVR_UViG_3300021513_000107-3300021513-Ga0190315_10004905
Arc-VirIMGVR_UViG_3300021513_000107-3300021513-Ga0190315_10004905
Identity
- Kingdom:
- archaea
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-95
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b0pA02 | 1.20.120.1460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.77 | 56.0 | 4.88e-01 | 76.5% | 82.7% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.70 | 47.0 | 4.02e-01 | 70.6% | 51.2% |
| 2qu7A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 57.0 | 4.23e-01 | 94.1% | 39.1% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 46.0 | 4.26e-01 | 70.6% | 56.9% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.68 | 47.0 | 3.55e-01 | 72.5% | 31.2% |
| 2z4tA02 | 3.40.50.11120 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain | 0.66 | 51.0 | 3.34e-01 | 84.3% | 20.0% |
| 3d1cA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 47.0 | 3.67e-01 | 80.4% | 38.6% |
| 8gpsA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.64 | 54.0 | 4.38e-01 | 100.0% | 76.2% |
| 1z3aA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.64 | 52.0 | 3.80e-01 | 96.1% | 95.5% |
| 3kzpA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.63 | 53.0 | 3.50e-01 | 98.0% | 37.7% |
| 1sfuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.69e-01 | 94.1% | 90.0% |
| 3hl1A02 | 6.10.140.1530 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 43.0 | 3.98e-01 | 70.6% | 60.0% |
| 2eb4D00 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.62 | 52.0 | 3.36e-01 | 96.1% | 75.8% |
| 2dt5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 4.26e-01 | 84.3% | 91.8% |
| 2ynmD01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.60 | 51.0 | 3.79e-01 | 98.0% | 56.5% |
| 4bf9A02 | 1.20.225.30 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Dihydrouridine synthase, C-terminal recognition domain | 0.60 | 47.0 | 4.21e-01 | 86.3% | 83.6% |
| 2wddA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.59 | 52.0 | 3.25e-01 | 100.0% | 37.6% |
| 1qrsA05 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 46.0 | 3.61e-01 | 90.2% | 46.3% |
| 4mdaA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 46.0 | 3.19e-01 | 90.2% | 29.5% |
| 1bdgA01 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.59 | 52.0 | 3.24e-01 | 100.0% | 39.1% |
| 1s4eG02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.58 | 52.0 | 3.65e-01 | 100.0% | 58.2% |
| 1miuA04 | 6.10.70.10 | Special › Helix non-globular › Topoisomerase I; Chain A, domain 4 › | 0.57 | 47.0 | 3.64e-01 | 96.1% | 43.4% |
| 2vkhA03 | 1.10.10.1780 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 42.0 | 3.82e-01 | 80.4% | 68.1% |
| 2xr1A03 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 44.0 | 2.89e-01 | 92.2% | 24.2% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 44.0 | 3.26e-01 | 92.2% | 66.9% |
| 4hi8A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.55 | 46.0 | 3.30e-01 | 100.0% | 71.8% |
| 1n11A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.54 | 42.0 | 2.56e-01 | 92.2% | 20.8% |
| 4neoA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.54 | 38.0 | 3.34e-01 | 76.5% | 75.9% |
| 1bhdA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.52 | 42.0 | 3.36e-01 | 92.2% | 47.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3281935 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.75 | 60.0 | 5.28e-01 | 88.2% | 90.7% |
| 3748500 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.70 | 59.0 | 3.52e-01 | 94.1% | 16.1% |
| 3816376 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 57.0 | 4.92e-01 | 100.0% | 84.7% |
| 1949795 | 2484.1.1.11 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p | 0.67 | 57.0 | 4.70e-01 | 96.1% | 90.4% |
| 4021970 | 109.3.1.176 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2, Ank_3, Ank_4 | 0.64 | 50.0 | 3.61e-01 | 88.2% | 35.5% |
| 3578169 | 11.1.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M | 0.63 | 49.0 | 3.46e-01 | 86.3% | 36.4% |
| 3217645 | 207.1.1.104 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_Zer-1 | 0.62 | 50.0 | 3.15e-01 | 94.1% | 16.2% |
| 5067395 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.62 | 52.0 | 4.52e-01 | 96.1% | 71.2% |
| 4942968 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.74e-01 | 98.0% | 92.8% |
| 3710834 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.61 | 49.0 | 3.88e-01 | 96.1% | 86.7% |
| 3739347 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.59 | 41.0 | 3.74e-01 | 76.5% | 58.7% |
| 3428390 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 44.0 | 3.57e-01 | 82.4% | 94.7% |
| 3287263 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.56 | 38.0 | 3.28e-01 | 72.5% | 71.8% |
| 4039627 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 40.0 | 2.90e-01 | 96.1% | 34.4% |
| 2529872 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.51 | 39.0 | 2.66e-01 | 94.1% | 26.7% |