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IMGVR_UViG_3300021513_000130-3300021513-Ga0190315_100059818

Arc-Vir

IMGVR_UViG_3300021513_000130-3300021513-Ga0190315_100059818

Quality

70.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-45
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gveA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.66 54.0 3.27e-01 100.0% 47.0%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 55.0 3.71e-01 97.7% 31.7%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 52.0 4.04e-01 100.0% 41.8%
1c3gA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.63 49.0 4.21e-01 100.0% 51.3%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.62 48.0 3.27e-01 86.0% 84.3%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 52.0 3.88e-01 100.0% 65.0%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 43.0 2.79e-01 93.0% 16.2%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 35.0 2.84e-01 79.1% 28.6%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 2.79e-01 86.0% 27.5%
1fs7A01 1.10.1130.10 Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A 0.60 49.0 3.00e-01 100.0% 29.8%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 45.0 2.83e-01 95.3% 14.3%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 50.0 3.11e-01 100.0% 56.8%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.59 47.0 2.90e-01 100.0% 15.4%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 49.0 3.64e-01 100.0% 63.4%
3dorA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 50.0 3.81e-01 100.0% 93.5%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 43.0 2.92e-01 81.4% 27.9%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 48.0 3.43e-01 100.0% 60.1%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.58 48.0 3.28e-01 97.7% 62.1%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 44.0 2.87e-01 90.7% 72.6%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 48.0 3.65e-01 100.0% 69.3%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 45.0 3.27e-01 90.7% 63.1%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 38.0 2.43e-01 72.1% 12.1%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 47.0 4.01e-01 100.0% 76.9%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 45.0 2.71e-01 100.0% 44.0%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.57 40.0 3.60e-01 79.1% 66.7%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.56 41.0 3.20e-01 83.7% 76.2%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 3.76e-01 95.3% 50.0%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 44.0 3.45e-01 100.0% 70.5%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 43.0 3.64e-01 100.0% 49.4%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 44.0 2.99e-01 100.0% 86.4%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.54 44.0 3.04e-01 100.0% 65.7%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.54 44.0 3.41e-01 100.0% 56.9%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.72e-01 100.0% 88.7%
4k3bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 42.0 3.55e-01 97.7% 48.8%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 42.0 3.33e-01 100.0% 70.9%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.52 43.0 3.49e-01 97.7% 48.4%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.64e-01 97.7% 16.7%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.52 40.0 2.62e-01 95.3% 41.3%
3rhaA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.39e-01 93.0% 88.7%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.32e-01 100.0% 71.3%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 43.0 3.12e-01 97.7% 44.5%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.52 39.0 3.14e-01 100.0% 38.1%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.51 43.0 3.10e-01 100.0% 32.8%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.51 41.0 2.90e-01 93.0% 39.2%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 41.0 2.99e-01 100.0% 32.7%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 44.0 3.06e-01 97.7% 45.7%
3q6bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 41.0 3.49e-01 100.0% 54.1%
5fl7G02 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.50 42.0 2.77e-01 100.0% 66.8%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.50 41.0 3.25e-01 97.7% 44.0%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 43.0 2.77e-01 100.0% 35.9%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 36.0 3.13e-01 93.0% 45.6%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.50 38.0 2.85e-01 86.0% 80.3%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.50 40.0 2.87e-01 97.7% 28.5%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.62e-01 100.0% 62.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3256573 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.70 47.0 3.12e-01 79.1% 18.2%
4954828 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.69 46.0 4.47e-01 100.0% 60.0%
4433789 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.67 54.0 3.29e-01 90.7% 27.7%
3636403 4001.1.1.4 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.67 45.0 3.30e-01 72.1% 44.6%
3890428 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.66 51.0 3.36e-01 86.0% 21.7%
3635617 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.65 52.0 5.16e-01 95.3% 93.3%
4997598 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 53.0 3.98e-01 97.7% 53.0%
3303587 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.63 44.0 2.74e-01 88.4% 12.1%
3500712 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.63 53.0 3.53e-01 97.7% 29.4%
4986861 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.63 52.0 4.22e-01 100.0% 89.9%
3949585 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.62 52.0 3.88e-01 97.7% 54.8%
4399128 7581.1.1.30 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.62 45.0 2.67e-01 81.4% 48.9%
5030848 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 52.0 3.63e-01 97.7% 46.9%
4976892 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 52.0 3.38e-01 100.0% 92.8%
5049353 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 51.0 3.74e-01 97.7% 50.4%
3603683 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 49.0 3.46e-01 95.3% 44.8%
3591474 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.61 46.0 2.96e-01 86.0% 18.2%
5012147 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 39.0 2.61e-01 79.1% 15.3%
3459406 221.1.1.7 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.60 46.0 3.55e-01 95.3% 35.2%
3422000 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.60 50.0 3.85e-01 100.0% 46.7%
4448455 385.1.1.1 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot 0.59 48.0 4.03e-01 95.3% 86.3%
4315296 5054.1.1.7 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA 0.59 39.0 2.88e-01 79.1% 22.3%
4809699 3781.1.1.1 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.59 43.0 3.90e-01 88.4% 55.4%
4939613 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.59 49.0 3.41e-01 90.7% 60.8%
4033072 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.59 47.0 3.79e-01 90.7% 78.8%
3709549 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 48.0 3.34e-01 100.0% 76.4%
3723832 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.58 43.0 2.65e-01 88.4% 43.3%
4258272 327.17.1.4 a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C 0.58 49.0 3.28e-01 100.0% 66.3%
5037829 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.58 44.0 3.46e-01 86.0% 51.0%
3195985 3447.1.1.9 alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24, DUF1295 0.57 40.0 2.73e-01 76.7% 23.2%
4880598 3070.2.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain 0.57 37.0 3.68e-01 95.3% 61.2%
4969506 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.56 46.0 3.19e-01 93.0% 58.0%
4882106 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.56 44.0 3.46e-01 100.0% 39.4%
423731 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.56 45.0 2.52e-01 100.0% 31.5%
3743393 59.1.4.2 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.56 45.0 2.65e-01 100.0% 27.7%
5018145 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.56 46.0 3.49e-01 100.0% 62.6%
3562933 198.1.1.4 alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.56 47.0 3.32e-01 100.0% 77.4%
3588288 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.55 44.0 3.10e-01 93.0% 44.7%
3194847 3343.1.1.2 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.55 42.0 2.39e-01 100.0% 19.5%
5078624 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.55 47.0 3.62e-01 100.0% 42.9%
3534588 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.55 41.0 2.61e-01 86.0% 61.6%
4198 4970.1.1.3 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B_2 0.55 36.0 3.15e-01 100.0% 41.5%
3964735 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.55 46.0 2.68e-01 97.7% 46.3%
3593808 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 38.0 3.06e-01 81.4% 41.0%
4449325 387.1.1.24 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Toxin_35 0.53 45.0 4.45e-01 97.7% 91.1%
4976198 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.53 44.0 3.59e-01 95.3% 50.6%
4946011 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 44.0 3.37e-01 100.0% 37.4%
4948264 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.53 42.0 3.64e-01 100.0% 53.8%
4836497 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.53 36.0 2.59e-01 79.1% 54.2%
3356202 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 45.0 2.71e-01 100.0% 19.4%
4160831 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.52 44.0 2.39e-01 93.0% 22.9%
3993311 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.52 38.0 2.95e-01 97.7% 30.4%
3627410 3447.1.1.1 alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24 0.52 40.0 2.56e-01 90.7% 16.8%
3986225 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.52 44.0 2.86e-01 100.0% 29.3%
3220363 3447.1.1.1 alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24 0.51 39.0 2.56e-01 90.7% 17.6%