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IMGVR_UViG_3300021541_000005-3300021541-Ga0214529_10004191

Arc-Vir

IMGVR_UViG_3300021541_000005-3300021541-Ga0214529_10004191

Identity

Kingdom:
archaea

Quality

91.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-37
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.85 59.0 5.08e-01 97.1% 47.3%
1z8fA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.78 62.0 4.22e-01 100.0% 25.6%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.73 61.0 4.68e-01 94.3% 45.7%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 57.0 4.31e-01 88.6% 37.2%
2bi7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.71 63.0 3.90e-01 100.0% 34.8%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.71 61.0 3.88e-01 100.0% 59.7%
4di1C02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 57.0 5.54e-01 100.0% 80.5%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.71 60.0 4.60e-01 100.0% 96.5%
2b67A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.71 62.0 3.80e-01 100.0% 48.0%
3q9oA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.71 54.0 3.48e-01 85.7% 17.4%
3o60A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 55.0 3.50e-01 100.0% 17.0%
3q1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.69 56.0 3.73e-01 91.4% 27.3%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.67 58.0 4.28e-01 100.0% 56.8%
3mabA00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.67 53.0 4.08e-01 100.0% 37.6%
1v32A00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.66 54.0 3.98e-01 97.1% 34.7%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.66 58.0 4.31e-01 100.0% 41.6%
1oahA01 1.10.1130.10 Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A 0.66 49.0 2.98e-01 100.0% 29.5%
3m9lA02 1.10.260.80 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.65 51.0 4.56e-01 88.6% 78.4%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.63 49.0 4.44e-01 100.0% 64.3%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 49.0 3.19e-01 100.0% 79.3%
8e7cA02 1.10.1840.10 Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 0.57 42.0 3.13e-01 82.9% 36.7%
4hl4A02 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.57 47.0 3.19e-01 94.3% 55.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3629758 577.1.1.1 ↗ alpha arrays › CRIB domain › CRIB domain › CRIB domain › PBD 0.93 82.0 6.37e-01 100.0% 47.9%
3251186 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.83 68.0 5.97e-01 100.0% 62.0%
4603092 212.1.1.16 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S5_C 0.83 60.0 4.05e-01 77.1% 30.0%
4175597 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.83 70.0 3.95e-01 100.0% 8.9%
4238908 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.83 71.0 3.89e-01 100.0% 6.5%
3288835 2003.1.1.70 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N_2 0.83 73.0 4.35e-01 100.0% 69.2%
4942351 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.81 61.0 3.80e-01 100.0% 15.8%
4992133 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.80 65.0 3.77e-01 100.0% 10.9%
3541829 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 58.0 4.01e-01 77.1% 55.5%
5079472 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 68.0 4.02e-01 100.0% 13.2%
3273440 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.78 64.0 4.51e-01 100.0% 30.5%
3971041 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 60.0 4.19e-01 91.4% 27.3%
3690443 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.77 60.0 4.22e-01 91.4% 28.6%
5046952 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.77 61.0 3.54e-01 100.0% 10.4%
None — 0.75 65.0 3.48e-01 100.0% 5.3%
5083870 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.74 59.0 3.66e-01 100.0% 29.0%
4480620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 63.0 3.38e-01 100.0% 5.0%
4039119 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.73 63.0 3.81e-01 100.0% 50.0%
4019653 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 61.0 4.52e-01 94.3% 41.1%
4020228 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 63.0 5.64e-01 100.0% 70.0%
3973713 159.1.1.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG 0.72 55.0 3.35e-01 94.3% 12.2%
3708699 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 56.0 4.51e-01 85.7% 55.4%
3739404 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.70 56.0 3.37e-01 100.0% 12.9%
3685767 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 3.73e-01 88.6% 29.0%
4962468 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.65 52.0 3.86e-01 100.0% 40.0%
4964800 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.65 55.0 3.94e-01 100.0% 87.6%
3190617 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.62 51.0 3.10e-01 100.0% 25.1%
4948120 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 3.58e-01 88.6% 33.3%
3592628 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.61 47.0 3.09e-01 94.3% 17.9%
4015907 601.33.1.14 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Erg28 0.59 46.0 3.69e-01 100.0% 42.9%