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IMGVR_UViG_3300021590_000007-3300021590-Ga0190354_100002733

Arc-Vir

IMGVR_UViG_3300021590_000007-3300021590-Ga0190354_100002733

Quality

81.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-42
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.72 53.0 3.91e-01 83.3% 82.2%
2n17A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.69 42.0 3.87e-01 95.2% 44.6%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 54.0 3.72e-01 97.6% 82.4%
2askA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.65 44.0 3.39e-01 71.4% 50.5%
4pytA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 46.0 3.31e-01 83.3% 26.6%
7z8iC01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.62 47.0 3.91e-01 85.7% 48.1%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.62 48.0 3.77e-01 85.7% 45.7%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 46.0 2.70e-01 83.3% 28.2%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 44.0 3.20e-01 83.3% 30.8%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.60 41.0 3.41e-01 71.4% 39.5%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 36.0 3.11e-01 71.4% 31.9%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 45.0 2.99e-01 100.0% 39.7%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 39.0 2.55e-01 73.8% 25.9%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.56 41.0 2.84e-01 83.3% 76.0%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 38.0 3.29e-01 76.2% 81.0%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 46.0 2.87e-01 92.9% 39.9%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.40e-01 78.6% 50.0%
3ty2A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.55 39.0 2.51e-01 81.0% 60.8%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.54 42.0 3.16e-01 97.6% 59.1%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 39.0 2.77e-01 78.6% 45.9%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.54 38.0 2.94e-01 100.0% 30.3%
4yapA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 38.0 2.71e-01 76.2% 51.6%
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.54 40.0 3.70e-01 100.0% 59.6%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.54 33.0 3.48e-01 78.6% 54.1%
2oxaA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.53 39.0 2.35e-01 88.1% 33.7%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 35.0 3.23e-01 71.4% 49.1%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 35.0 2.49e-01 71.4% 63.6%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 33.0 2.85e-01 88.1% 34.8%
1xhbA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 37.0 2.50e-01 90.5% 42.4%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 38.0 3.27e-01 78.6% 88.2%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 37.0 2.34e-01 78.6% 26.4%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 41.0 2.45e-01 92.9% 21.6%
1vx2I02 3.10.290.70 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › 0.52 37.0 2.99e-01 90.5% 53.1%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 37.0 2.95e-01 76.2% 96.4%
1fjrA02 2.170.180.11 Mainly Beta › Beta Complex › Methuselah ectodomain, domain 2 › Methuselah ectodomain, domain 2 0.52 38.0 2.85e-01 83.3% 32.0%
2kyyA00 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.52 36.0 2.44e-01 73.8% 65.4%
2qpwA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.51 34.0 2.63e-01 73.8% 53.2%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.51 38.0 2.19e-01 85.7% 76.9%
6s21B01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.50 39.0 2.32e-01 85.7% 64.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3696633 3393.1.1.2 extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.68 46.0 3.66e-01 73.8% 36.8%
3722860 2004.1.1.463 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd 0.66 45.0 2.60e-01 73.8% 7.6%
3998381 2004.1.1.432 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.65 52.0 3.37e-01 100.0% 38.8%
None 0.65 50.0 2.72e-01 97.6% 8.3%
5066432 7564.1.1.1 a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein 0.64 44.0 2.91e-01 73.8% 17.8%
4996190 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.64 47.0 3.47e-01 83.3% 71.2%
3702641 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.64 49.0 3.03e-01 88.1% 19.3%
3939832 2006.1.6.39 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb 0.63 54.0 3.33e-01 97.6% 60.4%
3788897 309.1.1.2 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.63 52.0 2.81e-01 92.9% 30.5%
3964552 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.62 50.0 3.67e-01 100.0% 99.3%
4947615 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.62 44.0 3.80e-01 83.3% 47.7%
4942265 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 41.0 3.29e-01 81.0% 34.1%
3414136 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.62 41.0 2.90e-01 100.0% 20.0%
3683227 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.61 50.0 3.20e-01 90.5% 45.9%
5049247 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.61 46.0 2.74e-01 88.1% 23.7%
3699192 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.60 46.0 2.90e-01 88.1% 34.7%
3716727 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.60 46.0 2.70e-01 88.1% 32.7%
4959825 5054.1.1.7 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA 0.60 47.0 2.71e-01 97.6% 15.6%
4496501 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 43.0 2.58e-01 76.2% 32.5%
4025380 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.60 45.0 2.59e-01 85.7% 13.0%
3789199 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 43.0 3.26e-01 78.6% 38.3%
3943457 2007.1.5.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › AroM 0.60 42.0 3.19e-01 78.6% 42.6%
4024875 4250.1.1.1 alpha bundles › Duffy-binding-like domain, N-terminal subdomain › Duffy-binding-like domain, N-terminal subdomain › Duffy-binding-like domain, N-terminal subdomain › Duffy_binding 0.60 47.0 3.17e-01 90.5% 34.7%
4887239 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.59 46.0 3.32e-01 90.5% 69.2%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 41.0 3.11e-01 73.8% 31.3%
3657220 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.58 41.0 2.36e-01 81.0% 7.0%
3627398 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.57 42.0 2.56e-01 83.3% 10.9%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 40.0 3.19e-01 71.4% 35.6%
3960804 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.57 41.0 3.05e-01 100.0% 26.7%
3305417 4232.1.1.0 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.57 39.0 3.70e-01 95.2% 58.2%
3272533 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 46.0 2.78e-01 95.2% 40.9%
5030856 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.56 43.0 3.24e-01 90.5% 56.0%
3618723 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.56 40.0 3.34e-01 73.8% 75.0%
4976267 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 42.0 2.72e-01 90.5% 37.3%
4033043 616.1.1.41 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.56 43.0 3.46e-01 88.1% 45.6%
3252037 109.3.1.20 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 0.56 44.0 2.96e-01 97.6% 21.1%
3328353 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.55 38.0 3.43e-01 71.4% 51.7%
3519734 7523.1.1.20 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lig_chan-Glu_bd 0.55 38.0 2.62e-01 76.2% 65.9%
3960168 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.55 35.0 3.31e-01 90.5% 46.0%
3636403 4001.1.1.4 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.55 38.0 2.83e-01 78.6% 59.2%
4985007 7581.1.1.6 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.55 43.0 3.12e-01 92.9% 97.2%
3253857 3110.1.1.2 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3-PglB_core 0.54 38.0 2.45e-01 73.8% 41.0%
3785231 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 39.0 2.43e-01 83.3% 45.7%
3266082 109.6.1.2 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.54 40.0 2.29e-01 78.6% 21.7%
3579929 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.54 38.0 2.57e-01 83.3% 16.3%
4068454 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.54 43.0 2.51e-01 95.2% 19.3%
3696015 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.53 44.0 2.69e-01 100.0% 22.4%
3939311 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 38.0 2.91e-01 78.6% 37.3%
4243212 109.4.1.1297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.53 38.0 2.11e-01 78.6% 51.7%
3517280 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.53 39.0 2.38e-01 85.7% 70.1%
5058546 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.53 42.0 2.36e-01 95.2% 13.4%
4022213 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 38.0 2.17e-01 81.0% 30.2%
4383876 5.1.11.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40, Beta-prop_NOL10_N 0.52 38.0 2.30e-01 83.3% 30.8%
3935090 7516.1.1.12 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Fringe 0.52 41.0 2.62e-01 100.0% 26.4%
3924924 387.1.7.0 few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold 0.52 33.0 3.55e-01 81.0% 68.6%
4428289 301.8.1.1 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.52 39.0 2.80e-01 81.0% 40.0%
3943350 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.52 39.0 3.17e-01 83.3% 42.4%
4215561 219.1.1.17 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2 0.52 40.0 2.36e-01 92.9% 19.3%
3589866 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.52 39.0 3.14e-01 83.3% 43.5%
4951522 3457.1.1.3 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.51 40.0 2.65e-01 95.2% 53.9%
3634792 376.1.3.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-PHD-like 0.51 35.0 2.89e-01 81.0% 36.5%
3510551 379.1.1.30 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › FOLN 0.51 36.0 3.02e-01 81.0% 75.0%
3621730 2004.1.1.98 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 0.51 42.0 2.88e-01 100.0% 68.6%