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IMGVR_UViG_3300021590_000007-3300021590-Ga0190354_100002751
Arc-VirIMGVR_UViG_3300021590_000007-3300021590-Ga0190354_100002751
Identity
- Kingdom:
- archaea
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-90
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.66 | 47.0 | 3.43e-01 | 74.4% | 67.6% |
| 3gm8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 45.0 | 4.16e-01 | 70.9% | 79.0% |
| 3tesA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 44.0 | 4.30e-01 | 70.9% | 80.9% |
| 2hx5A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 49.0 | 4.15e-01 | 82.6% | 97.2% |
| 5dmyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 43.0 | 3.83e-01 | 70.9% | 79.3% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 44.0 | 4.07e-01 | 73.3% | 93.5% |
| 6brbD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 42.0 | 4.19e-01 | 70.9% | 87.4% |
| 2oiwA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 45.0 | 3.89e-01 | 79.1% | 94.0% |
| 3gzrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 42.0 | 3.56e-01 | 73.3% | 79.4% |
| 1tdqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 41.0 | 3.99e-01 | 70.9% | 80.9% |
| 3t1wA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 4.02e-01 | 70.9% | 83.7% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 40.0 | 3.52e-01 | 70.9% | 88.7% |
| 2gf6A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 46.0 | 3.98e-01 | 83.7% | 74.4% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 41.0 | 3.44e-01 | 73.3% | 65.1% |
| 4rs1B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 41.0 | 3.87e-01 | 73.3% | 80.6% |
| 4jzjC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 3.72e-01 | 72.1% | 90.4% |
| 6n9aB02 | 3.30.420.200 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 37.0 | 4.11e-01 | 74.4% | 84.1% |
| 3u0aA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.56 | 38.0 | 2.80e-01 | 70.9% | 90.2% |
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 47.0 | 4.09e-01 | 93.0% | 89.0% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 38.0 | 3.41e-01 | 72.1% | 73.6% |
| 3g0kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 38.0 | 3.39e-01 | 72.1% | 71.9% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 35.0 | 3.56e-01 | 83.7% | 65.5% |
| 2cyeC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 47.0 | 4.13e-01 | 98.8% | 70.5% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.54 | 37.0 | 3.61e-01 | 74.4% | 63.6% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.53 | 39.0 | 3.51e-01 | 75.6% | 80.7% |
| 7fj9B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 32.0 | 2.68e-01 | 91.9% | 32.3% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.31e-01 | 74.4% | 72.7% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 46.0 | 3.35e-01 | 100.0% | 76.6% |
| 3s5tA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.51 | 35.0 | 2.92e-01 | 70.9% | 62.1% |
| 5tgnA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.41e-01 | 74.4% | 81.7% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.51 | 44.0 | 3.30e-01 | 98.8% | 90.6% |
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.50 | 43.0 | 3.48e-01 | 100.0% | 95.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040414 | 11.1.1.1443 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 | 0.66 | 45.0 | 4.33e-01 | 70.9% | 62.0% |
| 3510139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.64 | 46.0 | 3.55e-01 | 74.4% | 63.1% |
| 4632081 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.64 | 44.0 | 3.86e-01 | 70.9% | 77.6% |
| 4976079 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 44.0 | 4.25e-01 | 70.9% | 84.2% |
| 4115185 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.63 | 45.0 | 3.87e-01 | 74.4% | 79.2% |
| 4564098 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.62 | 43.0 | 3.82e-01 | 70.9% | 78.3% |
| 4371406 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.62 | 44.0 | 3.52e-01 | 75.6% | 62.9% |
| 4222773 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.61 | 47.0 | 3.51e-01 | 81.4% | 91.0% |
| 4040973 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.61 | 38.0 | 4.16e-01 | 73.3% | 77.1% |
| 4381671 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.61 | 44.0 | 3.55e-01 | 75.6% | 63.0% |
| 5030584 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 43.0 | 3.65e-01 | 74.4% | 87.9% |
| 3840019 | 2484.1.1.261 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27038 | 0.60 | 43.0 | 3.60e-01 | 75.6% | 84.7% |
| 4377534 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 43.0 | 3.72e-01 | 74.4% | 78.5% |
| 3187356 | 2484.1.1.223 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27036 | 0.59 | 48.0 | 3.75e-01 | 88.4% | 72.6% |
| 5046724 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 42.0 | 3.83e-01 | 74.4% | 89.6% |
| 3263815 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 39.0 | 3.93e-01 | 70.9% | 65.6% |
| 3937930 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.59 | 40.0 | 2.64e-01 | 70.9% | 16.7% |
| 3618766 | 11.1.5.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › P53 | 0.58 | 40.0 | 3.06e-01 | 70.9% | 67.5% |
| 3961733 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.58 | 37.0 | 3.68e-01 | 74.4% | 61.1% |
| 4507316 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.58 | 49.0 | 4.51e-01 | 96.5% | 86.1% |
| 3183690 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 47.0 | 3.98e-01 | 91.9% | 91.3% |
| 3173222 | 4075.1.1.0 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain | 0.56 | 42.0 | 3.83e-01 | 79.1% | 92.2% |
| 3770448 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.56 | 39.0 | 3.16e-01 | 72.1% | 84.1% |
| 4830163 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.56 | 39.0 | 3.15e-01 | 72.1% | 72.2% |
| 4206673 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.56 | 39.0 | 3.51e-01 | 74.4% | 82.4% |
| None | — | 0.55 | 37.0 | 3.15e-01 | 70.9% | 54.2% | |
| 5000916 | 244.3.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C | 0.54 | 36.0 | 3.49e-01 | 94.2% | 60.0% |
| 5032255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 34.0 | 3.75e-01 | 73.3% | 81.4% |
| 2557291 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.52 | 38.0 | 2.60e-01 | 77.9% | 65.7% |
| 3893915 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.51 | 35.0 | 3.16e-01 | 72.1% | 66.4% |
| 3228242 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.51 | 36.0 | 3.50e-01 | 75.6% | 76.0% |
| 3644755 | 5084.5.1.23 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD | 0.51 | 35.0 | 2.50e-01 | 72.1% | 82.5% |
| 2153195 | 2484.5.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect | 0.50 | 38.0 | 3.56e-01 | 83.7% | 93.0% |