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IMGVR_UViG_3300021590_000059-3300021590-Ga0190354_10000801

Arc-Vir

IMGVR_UViG_3300021590_000059-3300021590-Ga0190354_10000801

Quality

69.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-168
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04586.23 best Peptidase_S78 59.5 6.40e-16 99.3% 86.1%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1at3A00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.74 68.0 5.77e-01 97.2% 63.1%
1o6eA00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.73 66.0 5.58e-01 96.5% 68.9%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.70 39.0 4.94e-01 94.4% 90.7%
1cmvB00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.68 62.0 5.40e-01 96.5% 66.0%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.68 35.0 4.25e-01 80.3% 76.1%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 4.45e-01 95.8% 84.4%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 34.0 4.44e-01 95.1% 100.0%
3w3sA01 3.30.70.1920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 45.0 4.28e-01 96.5% 63.1%
2fyxA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.61 46.0 4.83e-01 96.5% 86.2%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.61 40.0 4.57e-01 96.5% 89.6%
2f5gA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.60 46.0 4.78e-01 97.9% 86.2%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.60 36.0 3.47e-01 97.9% 50.9%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.59 37.0 3.58e-01 99.3% 54.3%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 34.0 4.24e-01 95.8% 100.0%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 31.0 4.03e-01 93.7% 98.7%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.56 30.0 3.73e-01 78.9% 82.0%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 39.0 4.30e-01 96.5% 89.3%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 33.0 3.85e-01 90.8% 85.1%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.55 38.0 4.38e-01 91.5% 96.2%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 30.0 3.68e-01 81.0% 84.9%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 3.80e-01 95.8% 83.7%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 4.08e-01 96.5% 91.5%
1fnoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 4.27e-01 95.1% 100.0%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 4.03e-01 95.1% 98.0%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964948 1.1.16.4 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 0.90 77.0 8.19e-01 93.0% 100.0%
3954964 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.89 83.0 8.26e-01 96.5% 100.0%
5083161 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.88 75.0 7.45e-01 88.0% 91.0%
3945940 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.86 72.0 7.17e-01 86.6% 92.4%
5083920 50.1.1.0 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.86 72.0 7.27e-01 86.6% 100.0%
4032431 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.86 74.0 7.15e-01 89.4% 90.3%
5039158 50.1.1.3 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.85 76.0 7.28e-01 93.7% 98.8%
3945977 50.1.1.4 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.85 76.0 7.20e-01 94.4% 99.4%
4995675 50.1.1.0 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.84 73.0 6.95e-01 91.5% 90.9%
3585229 50.1.1.2 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 0.83 72.0 7.32e-01 91.5% 100.0%
3166306 50.1.1.4 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.82 73.0 7.10e-01 93.7% 100.0%
4929754 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.80 70.0 7.36e-01 90.8% 100.0%
1933303 50.1.1.2 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 0.80 69.0 6.51e-01 90.8% 87.3%
5003309 50.1.1.0 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.79 69.0 7.18e-01 90.1% 100.0%
3963908 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.74 38.0 5.27e-01 95.1% 100.0%
788 50.1.1.1 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 0.74 68.0 5.77e-01 97.2% 63.1%
1304358 50.1.1.1 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 0.73 67.0 5.62e-01 96.5% 65.3%
27577 50.1.1.1 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 0.73 66.0 5.48e-01 95.8% 66.7%
4942485 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.71 36.0 4.65e-01 81.0% 85.0%
3602442 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.71 54.0 6.05e-01 84.5% 100.0%
5051893 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.70 36.0 4.65e-01 85.9% 86.3%
3959024 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.70 42.0 4.81e-01 93.0% 80.0%
3958771 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.70 44.0 4.78e-01 96.5% 74.2%
3283246 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.70 46.0 4.63e-01 98.6% 65.5%
3286366 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.70 44.0 4.52e-01 95.8% 65.9%
3953574 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.69 45.0 4.55e-01 98.6% 66.4%
4451589 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.67 35.0 4.45e-01 96.5% 84.7%
3955063 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.66 46.0 4.57e-01 93.0% 68.3%
5019566 304.24.1.2 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949 0.66 33.0 4.39e-01 95.8% 86.3%
3957158 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.65 42.0 4.84e-01 90.1% 87.6%
3290923 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.65 44.0 4.58e-01 94.4% 72.6%
5074163 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 35.0 4.40e-01 96.5% 85.9%
3957231 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.65 44.0 4.95e-01 91.5% 88.2%
3959560 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.65 44.0 4.94e-01 90.8% 88.2%
3289705 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.64 44.0 4.52e-01 95.1% 71.4%
3956379 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.64 45.0 4.47e-01 94.4% 68.0%
3290618 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.64 44.0 4.43e-01 92.3% 70.0%
3288888 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.64 44.0 4.57e-01 95.1% 74.1%
3960414 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.64 44.0 4.46e-01 94.4% 69.7%
3491593 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 36.0 4.01e-01 81.0% 68.7%
3403404 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.63 33.0 4.24e-01 97.2% 88.7%
3282344 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.63 40.0 4.67e-01 97.2% 91.0%
3278188 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.62 43.0 4.35e-01 94.4% 69.7%
3669715 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.61 44.0 4.13e-01 96.5% 61.8%
4913412 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.61 45.0 4.78e-01 97.2% 85.6%
3954144 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.61 45.0 4.48e-01 93.7% 73.8%
3282819 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.61 42.0 4.25e-01 93.0% 70.7%
5116 304.55.2.1 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp 0.60 46.0 4.78e-01 97.9% 86.2%
3608511 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 40.0 4.65e-01 93.7% 100.0%
4654097 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.58 43.0 4.18e-01 96.5% 69.7%
4005635 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.57 47.0 5.00e-01 93.7% 99.2%
3777373 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.56 45.0 4.80e-01 95.8% 99.2%
3163709 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.56 47.0 4.97e-01 93.0% 99.2%
4889079 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.55 39.0 4.48e-01 84.5% 97.2%
5079022 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.53 35.0 3.89e-01 99.3% 85.5%
5068725 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 28.0 3.59e-01 80.3% 93.3%
5027911 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.53 34.0 4.00e-01 98.6% 94.0%
2771876 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.53 39.0 4.35e-01 81.7% 97.3%
5023739 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.52 35.0 3.97e-01 97.9% 91.4%
5042476 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.52 32.0 3.84e-01 99.3% 92.6%
5082425 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.52 34.0 3.93e-01 98.6% 94.0%
5033074 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 35.0 3.94e-01 100.0% 90.9%
5030373 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 32.0 3.81e-01 99.3% 92.6%
4937870 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 32.0 3.76e-01 98.6% 91.6%
5040415 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 34.0 3.92e-01 99.3% 92.4%
5080834 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 34.0 3.84e-01 99.3% 90.5%
5072501 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 34.0 3.96e-01 97.9% 97.0%
4946164 1036.1.1.0 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain 0.50 34.0 3.91e-01 100.0% 94.3%
4997766 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.50 34.0 3.85e-01 100.0% 92.4%
4358407 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 37.0 4.13e-01 97.9% 99.1%