Back to structures

IMGVR_UViG_3300021590_000082-3300021590-Ga0190354_10013222

Arc-Vir

IMGVR_UViG_3300021590_000082-3300021590-Ga0190354_10013222

Quality

95.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-146
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.83 63.0 6.98e-01 92.5% 95.4%
4qbnA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.72 46.0 5.43e-01 94.0% 92.5%
4xqkA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.68 54.0 5.24e-01 94.7% 76.4%
3m6mD00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 45.0 4.79e-01 97.0% 83.1%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.63 57.0 4.38e-01 98.5% 85.9%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 47.0 4.76e-01 100.0% 78.5%
1obhA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 48.0 3.71e-01 84.2% 95.1%
2gb7D00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.58 53.0 4.05e-01 99.2% 67.8%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 27.0 3.49e-01 75.9% 84.7%
1vq8L02 3.100.10.10 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › 0.54 31.0 3.67e-01 92.5% 80.9%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 45.0 3.76e-01 92.5% 82.2%
4xymC03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.53 47.0 4.37e-01 97.0% 79.3%
2ls5A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 38.0 3.57e-01 94.0% 61.0%
1zzgA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 41.0 3.80e-01 95.5% 63.9%
3c8zA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 46.0 3.54e-01 100.0% 97.8%
4h4dA02 3.40.50.11270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 32.0 3.70e-01 90.2% 85.4%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.51 37.0 3.92e-01 97.7% 86.8%
1rqgA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 40.0 3.62e-01 84.2% 96.7%
1pjqA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 35.0 3.81e-01 94.0% 85.7%
3d7nA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.50 42.0 4.02e-01 97.0% 78.3%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938264 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.87 65.0 6.73e-01 91.7% 81.6%
3290660 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.86 65.0 6.97e-01 94.7% 89.6%
5030982 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.84 65.0 6.69e-01 93.2% 84.0%
4994615 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.84 64.0 6.44e-01 93.2% 77.8%
5035528 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.84 63.0 6.49e-01 92.5% 81.6%
4999754 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.84 65.0 7.05e-01 93.2% 93.0%
4945273 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.83 64.0 7.05e-01 94.0% 95.5%
4931034 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.83 64.0 6.92e-01 94.0% 92.2%
4626033 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.83 64.0 6.71e-01 94.0% 87.5%
5034166 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.83 65.0 6.96e-01 94.0% 93.0%
5076632 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.83 64.0 6.84e-01 95.5% 90.7%
5055514 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.82 63.0 6.93e-01 94.0% 95.5%
5041799 2008.1.1.220 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.82 62.0 6.14e-01 94.7% 74.3%
4958431 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 63.0 6.81e-01 97.7% 92.2%
5029659 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.82 62.0 6.68e-01 95.5% 90.4%
4998521 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.82 57.0 6.32e-01 80.5% 86.4%
5053905 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 58.0 6.61e-01 86.5% 96.0%
5078518 2008.1.1.220 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.82 64.0 6.98e-01 94.0% 97.3%
5051988 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.82 60.0 6.30e-01 91.0% 83.3%
5030624 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.81 58.0 6.46e-01 88.7% 93.3%
5026939 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.80 60.0 6.47e-01 93.2% 89.6%
4961034 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 60.0 6.53e-01 99.2% 94.5%
4984290 2008.1.1.235 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.78 60.0 6.39e-01 94.0% 92.2%
4634054 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.78 56.0 5.76e-01 91.7% 78.4%
5009937 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 63.0 6.73e-01 94.7% 98.3%
5042516 2008.1.1.235 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.77 65.0 6.69e-01 94.0% 93.6%
5009448 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 63.0 6.53e-01 96.2% 92.0%
5063787 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.77 60.0 6.17e-01 94.7% 86.4%
5021996 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.77 59.0 6.32e-01 94.7% 93.0%
5009647 2008.1.1.235 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.76 62.0 5.24e-01 94.0% 53.8%
5003652 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 60.0 6.48e-01 97.7% 94.8%
4984635 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 62.0 6.61e-01 94.0% 96.6%
4934034 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 64.0 4.84e-01 94.0% 40.7%
5081823 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 59.0 5.89e-01 94.7% 79.3%
4949870 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 67.0 5.62e-01 93.2% 82.3%
4943284 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 54.0 5.51e-01 94.0% 75.4%
4993521 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 62.0 6.58e-01 93.2% 95.8%
4968040 2008.1.1.235 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.75 62.0 6.34e-01 94.0% 90.0%
5037497 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.74 57.0 4.71e-01 94.0% 47.1%
4977249 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.74 60.0 5.97e-01 91.0% 82.2%
5061506 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.73 52.0 5.59e-01 94.7% 85.2%
3943562 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 57.0 5.92e-01 97.7% 88.0%
5014788 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.72 56.0 5.96e-01 94.7% 93.9%
5077143 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.72 56.0 6.00e-01 94.7% 94.8%
4928402 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 54.0 5.74e-01 91.0% 89.6%
4926971 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 59.0 5.58e-01 93.2% 74.8%
2715553 2008.1.1.34 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc 0.71 60.0 6.26e-01 94.7% 98.3%
4968712 2008.1.1.87 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.71 64.0 5.92e-01 99.2% 77.6%
5001925 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.71 60.0 5.75e-01 94.7% 80.0%
4937277 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.70 55.0 5.47e-01 94.0% 80.0%
5077869 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 60.0 6.06e-01 97.0% 89.6%
3278307 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 51.0 5.00e-01 100.0% 70.3%
5077023 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.67 58.0 5.38e-01 94.7% 73.3%
4969069 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.67 54.0 5.41e-01 94.7% 84.4%
5078702 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.66 53.0 5.50e-01 94.7% 91.2%
3603146 2008.1.1.95 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.65 56.0 4.36e-01 94.0% 46.0%
5048875 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 59.0 5.71e-01 100.0% 91.3%
3944117 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 58.0 5.49e-01 97.7% 88.0%
4942149 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 53.0 5.04e-01 93.2% 76.1%
4669225 2008.1.1.104 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cap4_nuclease 0.63 52.0 4.90e-01 90.2% 72.5%
4525523 2008.1.1.85 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.62 56.0 4.54e-01 100.0% 83.1%
5041197 2008.1.1.30 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Tn7_TnsA-like_N 0.62 51.0 4.70e-01 99.2% 68.2%
4950791 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.61 54.0 4.90e-01 94.7% 72.6%
3838750 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.61 53.0 5.21e-01 93.2% 95.9%
4392521 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.60 54.0 4.13e-01 95.5% 68.4%
4947491 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 52.0 4.93e-01 100.0% 80.0%
4043610 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 51.0 4.12e-01 94.0% 55.2%
4225517 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.58 53.0 4.42e-01 97.0% 72.9%
4324611 2008.1.1.166 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_XcyI 0.58 51.0 3.85e-01 94.7% 40.6%
3187151 2003.1.5.99 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SRR1 0.57 37.0 3.21e-01 73.7% 44.1%
5068744 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.53 48.0 4.51e-01 97.0% 85.0%
3780030 2490.3.1.0 a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal proteins L15p and L18e › Ribosomal proteins L15p and L18e 0.53 31.0 3.25e-01 92.5% 62.5%
3722751 7514.1.1.3 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.53 37.0 3.43e-01 96.2% 56.5%