Back to structures

IMGVR_UViG_3300021962_009883-3300021962-Ga0222713_100170186

Arc-Vir

IMGVR_UViG_3300021962_009883-3300021962-Ga0222713_100170186

Quality

94.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-88
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 4.62e-01 100.0% 47.6%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 44.0 4.44e-01 93.3% 67.1%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 43.0 4.31e-01 93.3% 64.6%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 47.0 4.40e-01 93.3% 64.1%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.62 55.0 4.67e-01 100.0% 93.5%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 53.0 4.24e-01 100.0% 63.7%
2mn5A00 3.30.30.140 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.61 40.0 4.47e-01 86.7% 91.1%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.61 51.0 4.00e-01 98.7% 43.4%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.60 52.0 4.20e-01 100.0% 64.1%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.60 53.0 4.43e-01 98.7% 65.4%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 41.0 3.94e-01 94.7% 65.5%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.58 52.0 4.82e-01 100.0% 77.9%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.58 49.0 4.24e-01 98.7% 93.5%
1iamA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.90e-01 100.0% 65.1%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 49.0 3.24e-01 100.0% 23.2%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 3.45e-01 100.0% 50.0%
2x7fC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 46.0 4.30e-01 100.0% 74.5%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 46.0 4.28e-01 98.7% 72.2%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.55 48.0 3.41e-01 100.0% 53.5%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.97e-01 100.0% 68.4%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.54 47.0 3.50e-01 98.7% 41.7%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.54 45.0 3.62e-01 100.0% 46.4%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 48.0 4.02e-01 100.0% 64.6%
4rsvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.72e-01 100.0% 65.6%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.53 39.0 3.20e-01 94.7% 39.7%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 44.0 3.82e-01 90.7% 100.0%
4tpvA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.53 46.0 3.55e-01 100.0% 48.4%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.94e-01 100.0% 74.4%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 43.0 3.96e-01 100.0% 68.4%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 45.0 3.86e-01 94.7% 98.4%
2wasA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 45.0 3.91e-01 93.3% 100.0%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.98e-01 100.0% 74.4%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 44.0 3.41e-01 96.0% 66.3%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 44.0 3.64e-01 100.0% 51.0%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 47.0 4.14e-01 100.0% 69.4%
4nasB01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.51 42.0 3.75e-01 93.3% 66.4%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.71e-01 100.0% 75.0%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 41.0 3.54e-01 92.0% 100.0%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.51 44.0 3.01e-01 100.0% 59.9%
4exkA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 46.0 4.10e-01 100.0% 87.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040343 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.73 47.0 5.21e-01 92.0% 83.3%
4512374 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.68 45.0 4.32e-01 93.3% 60.0%
3535347 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 60.0 5.19e-01 100.0% 77.4%
3968713 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.65 58.0 5.45e-01 100.0% 81.1%
5067380 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 58.0 4.75e-01 100.0% 71.4%
3909822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 59.0 5.16e-01 100.0% 80.0%
3970830 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 52.0 4.70e-01 100.0% 64.0%
5022644 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 50.0 4.65e-01 100.0% 65.3%
3520873 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.65 58.0 4.69e-01 100.0% 82.1%
4944633 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 43.0 4.37e-01 94.7% 69.3%
5079559 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 57.0 4.98e-01 100.0% 78.3%
3967435 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.64 58.0 5.36e-01 100.0% 80.0%
4319057 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 56.0 4.85e-01 100.0% 64.3%
3706674 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 56.0 4.72e-01 100.0% 66.4%
4031285 1.1.13.64 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.62 54.0 5.11e-01 100.0% 80.0%
3999193 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.62 30.0 3.15e-01 89.3% 47.1%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.61 52.0 4.85e-01 100.0% 76.1%
4966144 3454.1.1.9 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PF26687 0.61 49.0 5.09e-01 93.3% 95.7%
4402979 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 41.0 4.15e-01 94.7% 69.3%
5038876 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.60 54.0 5.09e-01 98.7% 82.2%
5070341 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.60 50.0 4.30e-01 94.7% 98.4%
4057590 1.1.5.86 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.60 52.0 4.30e-01 100.0% 55.7%
4261744 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.59 52.0 4.44e-01 100.0% 71.2%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.58 50.0 4.47e-01 100.0% 67.6%
80 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.58 49.0 3.98e-01 100.0% 66.3%
3949274 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 51.0 4.37e-01 100.0% 63.5%
3551813 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 49.0 3.13e-01 100.0% 19.5%
4254454 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.57 50.0 3.49e-01 100.0% 51.0%
3804539 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 46.0 4.04e-01 96.0% 60.0%
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 48.0 4.63e-01 100.0% 83.5%
4545576 11.1.1.66 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MdoG 0.56 48.0 4.29e-01 100.0% 67.6%
3501988 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 48.0 3.37e-01 98.7% 53.1%
3540888 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.56 47.0 3.68e-01 96.0% 95.9%
3235144 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 48.0 3.23e-01 100.0% 25.4%
4595775 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.55 48.0 3.43e-01 100.0% 59.1%
3491434 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.55 45.0 3.85e-01 94.7% 98.5%
3994426 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.54 47.0 4.09e-01 100.0% 77.5%
3541435 271.1.1.5 beta barrels › GFP-like › GFP-like › GFP-like › G2F 0.54 47.0 3.39e-01 100.0% 82.1%
4958890 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.54 37.0 3.71e-01 94.7% 68.8%
4940409 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.54 40.0 3.99e-01 94.7% 75.0%
4931129 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.54 40.0 3.94e-01 92.0% 72.9%
3283968 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.54 46.0 3.28e-01 93.3% 99.5%
4201836 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 46.0 3.29e-01 100.0% 55.2%
4300476 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.53 45.0 3.33e-01 98.7% 57.3%
5027110 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 47.0 3.24e-01 100.0% 44.5%
3801149 11.1.5.123 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3694 0.53 46.0 3.31e-01 100.0% 45.7%
3648905 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 46.0 3.85e-01 97.3% 64.6%
3939142 206.1.1.78 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.52 45.0 2.89e-01 100.0% 20.3%
5065295 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.52 37.0 2.98e-01 78.7% 36.3%
5059104 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.61e-01 100.0% 61.0%
4312381 11.1.1.873 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CNNM4_N 0.52 45.0 3.76e-01 100.0% 66.7%
1320672 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.51 43.0 3.02e-01 96.0% 89.7%
3605297 306.10.1.0 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.51 43.0 3.67e-01 94.7% 97.6%
3965912 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 45.0 4.20e-01 100.0% 88.4%
4521939 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.51 44.0 3.12e-01 100.0% 55.6%
4936296 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.50 43.0 3.03e-01 100.0% 46.8%
3509360 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.50 35.0 3.86e-01 88.0% 100.0%
4672169 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.50 42.0 3.07e-01 100.0% 55.5%
4163845 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.50 42.0 3.06e-01 100.0% 56.8%