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IMGVR_UViG_3300021962_011364-3300021962-Ga0222713_100285163
Arc-VirIMGVR_UViG_3300021962_011364-3300021962-Ga0222713_100285163
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-75
Domain cluster:
rep: NC_061451.1__YP_010303367.1__MPK74_gp226__00226__D105-176
D2
high
residues 97-190
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07715.21 best | Plug | 30.1 | 8.40e-07 | 93.6% | 74.8% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m8bA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.84 | 74.0 | 6.71e-01 | 94.7% | 83.9% |
| 8p97A01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.82 | 66.0 | 3.95e-01 | 85.1% | 13.6% |
| 1kmoA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.81 | 72.0 | 6.43e-01 | 94.7% | 78.9% |
| 3cslA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.80 | 73.0 | 6.53e-01 | 97.9% | 75.8% |
| 1xkwA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.80 | 63.0 | 6.16e-01 | 85.1% | 77.0% |
| 1xkhA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.79 | 64.0 | 6.17e-01 | 85.1% | 77.9% |
| 3fhhA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.78 | 71.0 | 6.45e-01 | 98.9% | 83.1% |
| 3qlbA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.76 | 71.0 | 6.21e-01 | 100.0% | 74.8% |
| 3v8xA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.76 | 65.0 | 5.73e-01 | 91.5% | 76.5% |
| 4b7oA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.75 | 63.0 | 6.00e-01 | 91.5% | 81.1% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.75 | 64.0 | 3.80e-01 | 91.5% | 14.7% |
| 5fokB01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.73 | 67.0 | 6.04e-01 | 100.0% | 74.8% |
| 4xttA00 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.54 | 32.0 | 3.36e-01 | 87.2% | 63.5% |
| 3mhzA03 | 3.10.20.110 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 46.0 | 4.29e-01 | 100.0% | 89.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967068 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.88 | 82.0 | 6.91e-01 | 98.9% | 83.4% |
| 3060580 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.87 | 78.0 | 7.16e-01 | 94.7% | 79.5% |
| 4116018 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.84 | 79.0 | 6.78e-01 | 100.0% | 78.6% |
| 3981818 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.83 | 77.0 | 6.99e-01 | 97.9% | 81.7% |
| 3387256 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.81 | 73.0 | 6.53e-01 | 98.9% | 81.5% |
| 1717340 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.80 | 73.0 | 6.69e-01 | 97.9% | 80.8% |
| 3967025 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.80 | 75.0 | 6.54e-01 | 100.0% | 79.3% |
| 1716635 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.80 | 73.0 | 6.34e-01 | 97.9% | 75.4% |
| 3943624 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.80 | 66.0 | 5.84e-01 | 87.2% | 82.3% |
| 3838104 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.80 | 68.0 | 6.21e-01 | 90.4% | 74.2% |
| 3969554 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.80 | 70.0 | 6.34e-01 | 94.7% | 77.6% |
| 3968733 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.80 | 72.0 | 6.43e-01 | 97.9% | 76.9% |
| 3969693 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.79 | 72.0 | 6.49e-01 | 97.9% | 84.0% |
| 3964130 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.79 | 73.0 | 6.32e-01 | 100.0% | 73.6% |
| 3838161 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.79 | 73.0 | 6.21e-01 | 98.9% | 73.8% |
| 3100975 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.79 | 70.0 | 6.42e-01 | 94.7% | 78.8% |
| 3967961 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.79 | 73.0 | 6.60e-01 | 100.0% | 81.6% |
| 3387447 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.79 | 71.0 | 6.22e-01 | 97.9% | 81.5% |
| 1760706 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.78 | 73.0 | 6.12e-01 | 100.0% | 72.5% |
| 4870098 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.78 | 66.0 | 6.18e-01 | 91.5% | 80.9% |
| 1760520 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.78 | 71.0 | 6.43e-01 | 98.9% | 82.4% |
| 1716668 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.77 | 71.0 | 6.23e-01 | 100.0% | 75.9% |
| 3968792 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.77 | 70.0 | 6.28e-01 | 98.9% | 78.5% |
| 3971662 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.77 | 69.0 | 6.17e-01 | 97.9% | 84.6% |
| 3967391 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.76 | 70.0 | 6.30e-01 | 98.9% | 84.0% |
| 5082117 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.76 | 69.0 | 6.31e-01 | 97.9% | 82.5% |
| 1718523 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.76 | 70.0 | 6.24e-01 | 98.9% | 76.6% |
| 3163597 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.76 | 70.0 | 5.97e-01 | 100.0% | 73.8% |
| 4007345 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.75 | 70.0 | 6.08e-01 | 100.0% | 74.1% |
| 3963508 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.75 | 65.0 | 5.88e-01 | 94.7% | 75.2% |
| 4878132 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.74 | 66.0 | 5.70e-01 | 97.9% | 82.9% |
| 2755876 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.74 | 66.0 | 5.96e-01 | 96.8% | 73.6% |
| 4492777 | 3070.2.1.1 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug | 0.73 | 67.0 | 5.70e-01 | 100.0% | 69.3% |
| 3973015 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.72 | 66.0 | 6.08e-01 | 100.0% | 79.2% |
D3
medium
residues 214-387
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6eheA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.77 | 45.0 | 3.65e-01 | 97.7% | 33.8% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.76 | 36.0 | 3.94e-01 | 84.5% | 54.4% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.71 | 36.0 | 3.85e-01 | 85.6% | 56.1% |
| 1kmoA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.66 | 51.0 | 3.47e-01 | 100.0% | 26.2% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.65 | 47.0 | 4.09e-01 | 98.3% | 50.8% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.62 | 36.0 | 3.41e-01 | 97.7% | 48.8% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.62 | 51.0 | 3.70e-01 | 99.4% | 32.6% |
| 3qlbA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.60 | 57.0 | 3.90e-01 | 100.0% | 33.1% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 35.0 | 3.77e-01 | 98.9% | 68.2% |
| 5fokA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.58 | 55.0 | 3.80e-01 | 100.0% | 37.5% |
| 3cslA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.58 | 52.0 | 3.46e-01 | 99.4% | 26.2% |
| 1xkwA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.57 | 54.0 | 3.72e-01 | 99.4% | 33.9% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.57 | 54.0 | 3.57e-01 | 100.0% | 61.1% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.56 | 38.0 | 3.63e-01 | 98.9% | 58.3% |
| 2w16A03 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.55 | 52.0 | 3.58e-01 | 99.4% | 33.3% |
| 1by5A02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.55 | 53.0 | 3.57e-01 | 100.0% | 32.3% |
| 3dwoX00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.54 | 50.0 | 3.61e-01 | 100.0% | 37.8% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 37.0 | 3.74e-01 | 96.6% | 69.2% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 34.0 | 3.42e-01 | 100.0% | 66.1% |
| 1i78B00 | 2.40.128.90 | Mainly Beta › Beta Barrel › Lipocalin › OMPT-like | 0.51 | 45.0 | 3.76e-01 | 98.3% | 56.8% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1760440 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.71 | 54.0 | 3.75e-01 | 98.9% | 26.8% |
| 4102065 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.65 | 49.0 | 4.16e-01 | 98.3% | 49.1% |
| 5081121 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.63 | 38.0 | 3.87e-01 | 99.4% | 59.4% |
| 3964588 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.63 | 41.0 | 3.31e-01 | 97.1% | 36.0% |
| 3100974 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.63 | 50.0 | 4.66e-01 | 99.4% | 68.3% |
| 3948040 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.61 | 42.0 | 3.29e-01 | 100.0% | 34.3% |
| 3965126 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.60 | 46.0 | 3.41e-01 | 98.9% | 34.6% |
| 4116729 | 5084.1.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF | 0.58 | 38.0 | 3.87e-01 | 96.6% | 67.1% |
| 4870099 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.58 | 55.0 | 3.74e-01 | 100.0% | 35.4% |
| 3839880 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.56 | 54.0 | 3.59e-01 | 100.0% | 46.2% |
| 3977398 | 5084.1.1.16 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom | 0.56 | 36.0 | 3.81e-01 | 98.9% | 70.6% |
| 3965061 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.56 | 53.0 | 4.52e-01 | 99.4% | 67.7% |
| 4440914 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.56 | 52.0 | 3.43e-01 | 100.0% | 45.5% |
| 4188949 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.55 | 41.0 | 2.80e-01 | 96.6% | 24.0% |
| 4524066 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.55 | 50.0 | 3.39e-01 | 99.4% | 29.0% |
| 4655968 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.55 | 41.0 | 3.99e-01 | 99.4% | 70.0% |
| 4113088 | 5084.1.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane | 0.54 | 41.0 | 3.91e-01 | 98.9% | 66.5% |
| 2755875 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.54 | 45.0 | 3.11e-01 | 98.9% | 28.6% |
| 3965621 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.53 | 51.0 | 3.24e-01 | 100.0% | 29.4% |
| 3227628 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.52 | 49.0 | 3.85e-01 | 100.0% | 78.2% |
| 2719886 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.51 | 48.0 | 3.02e-01 | 99.4% | 23.2% |
| 4130771 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.50 | 36.0 | 3.61e-01 | 97.1% | 69.7% |
| 4652602 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.50 | 46.0 | 3.77e-01 | 100.0% | 56.9% |
| 4636309 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.50 | 38.0 | 3.56e-01 | 97.7% | 64.2% |
D5
medium
residues 444-576
Domain cluster:
rep: IMGVR_UViG_3300005408_000123-3300005408-Ga0066848_100008501__D494-657
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14905.13 best | OMP_b-brl_3 | 47.7 | 1.60e-12 | 92.5% | 27.2% |
CATH (58)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kmoA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.85 | 82.0 | 5.26e-01 | 100.0% | 26.8% |
| 5fokA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.84 | 79.0 | 5.11e-01 | 100.0% | 43.3% |
| 8p97A01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.83 | 72.0 | 4.55e-01 | 100.0% | 19.8% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.83 | 35.0 | 5.31e-01 | 76.7% | 91.5% |
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.83 | 79.0 | 4.91e-01 | 100.0% | 22.9% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.83 | 70.0 | 4.64e-01 | 99.2% | 25.1% |
| 2w16A03 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.82 | 78.0 | 5.00e-01 | 100.0% | 34.4% |
| 6wimA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.82 | 69.0 | 4.88e-01 | 97.7% | 32.0% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.79 | 55.0 | 4.11e-01 | 97.7% | 30.9% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.79 | 33.0 | 4.95e-01 | 75.9% | 90.0% |
| 3v89A02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.78 | 74.0 | 4.66e-01 | 100.0% | 31.1% |
| 3qlbA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.78 | 73.0 | 4.73e-01 | 100.0% | 27.5% |
| 6wilA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.78 | 66.0 | 4.76e-01 | 97.7% | 33.9% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.77 | 72.0 | 4.51e-01 | 100.0% | 21.7% |
| 1xkwA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.77 | 72.0 | 4.69e-01 | 100.0% | 32.2% |
| 1fepA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.76 | 71.0 | 4.60e-01 | 100.0% | 28.6% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.75 | 33.0 | 4.87e-01 | 78.2% | 90.5% |
| 4aipC02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.73 | 67.0 | 4.32e-01 | 100.0% | 23.6% |
| 4gf4A00 | 2.40.160.180 | Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB | 0.73 | 60.0 | 4.51e-01 | 91.0% | 38.5% |
| 4afkA00 | 2.40.160.100 | Mainly Beta › Beta Barrel › Porin › | 0.71 | 66.0 | 4.46e-01 | 97.0% | 31.9% |
| 3bryA00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.71 | 66.0 | 4.63e-01 | 100.0% | 42.7% |
| 4eg9A00 | 2.50.20.40 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.71 | 42.0 | 3.43e-01 | 82.7% | 33.8% |
| 1nqfA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.70 | 66.0 | 4.53e-01 | 100.0% | 37.4% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.70 | 64.0 | 5.06e-01 | 96.2% | 52.0% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.70 | 48.0 | 4.67e-01 | 82.0% | 62.8% |
| 2o4vA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.70 | 66.0 | 4.49e-01 | 99.2% | 42.1% |
| 5dl5A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.68 | 64.0 | 4.39e-01 | 99.2% | 36.3% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.68 | 59.0 | 4.59e-01 | 97.0% | 45.4% |
| 6rtqA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.67 | 37.0 | 3.75e-01 | 81.2% | 53.4% |
| 3kvnA02 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.67 | 61.0 | 4.56e-01 | 97.0% | 44.2% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.67 | 51.0 | 4.10e-01 | 97.0% | 43.4% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 35.0 | 3.48e-01 | 92.5% | 48.9% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.64 | 47.0 | 4.56e-01 | 93.2% | 68.7% |
| 1lshA04 | 2.20.80.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 | 0.62 | 57.0 | 4.56e-01 | 98.5% | 61.0% |
| 1af6A00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.62 | 58.0 | 3.96e-01 | 100.0% | 39.0% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.62 | 47.0 | 4.33e-01 | 100.0% | 61.5% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.61 | 56.0 | 3.92e-01 | 100.0% | 40.7% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.61 | 48.0 | 4.60e-01 | 93.2% | 71.6% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.61 | 38.0 | 4.66e-01 | 80.5% | 100.0% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 39.0 | 3.75e-01 | 94.0% | 58.7% |
| 1ek9A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.59 | 46.0 | 3.21e-01 | 82.0% | 63.6% |
| 2vdfA00 | 2.40.128.100 | Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin | 0.57 | 52.0 | 4.27e-01 | 97.0% | 56.4% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.57 | 46.0 | 3.50e-01 | 85.0% | 78.4% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.55 | 41.0 | 4.01e-01 | 93.2% | 71.0% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 46.0 | 4.23e-01 | 97.0% | 68.6% |
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 39.0 | 3.89e-01 | 94.7% | 71.1% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.55 | 49.0 | 3.74e-01 | 96.2% | 42.9% |
| 4fuvA00 | 2.40.160.170 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 43.0 | 3.69e-01 | 83.5% | 71.4% |
| 5nj5A01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.54 | 49.0 | 4.07e-01 | 100.0% | 73.7% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.54 | 35.0 | 3.17e-01 | 92.5% | 47.5% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.54 | 47.0 | 4.06e-01 | 93.2% | 66.7% |
| 2obdA02 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.53 | 44.0 | 3.92e-01 | 88.7% | 74.1% |
| 1vl4A01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.53 | 47.0 | 4.12e-01 | 97.7% | 80.0% |
| 5azsA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.53 | 33.0 | 4.01e-01 | 78.2% | 98.8% |
| 3qtdA01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.52 | 47.0 | 3.95e-01 | 99.2% | 76.8% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 38.0 | 3.64e-01 | 91.7% | 65.2% |
| 3kkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 30.0 | 2.96e-01 | 72.9% | 52.1% |
| 4tw1B00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.50 | 42.0 | 3.37e-01 | 93.2% | 50.4% |
ECOD (85)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838163 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.86 | 82.0 | 5.17e-01 | 100.0% | 26.7% |
| 4440914 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.85 | 81.0 | 5.00e-01 | 100.0% | 22.5% |
| 3970531 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.84 | 81.0 | 5.02e-01 | 100.0% | 25.2% |
| 1760440 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.84 | 80.0 | 5.21e-01 | 100.0% | 27.0% |
| 3964119 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.83 | 79.0 | 5.49e-01 | 100.0% | 40.8% |
| 2755875 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.82 | 78.0 | 5.03e-01 | 100.0% | 27.1% |
| 3948186 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.82 | 78.0 | 4.92e-01 | 100.0% | 25.0% |
| 2719886 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.79 | 75.0 | 4.49e-01 | 100.0% | 19.8% |
| 2393529 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.79 | 75.0 | 4.84e-01 | 100.0% | 30.9% |
| 4865042 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.79 | 75.0 | 4.91e-01 | 100.0% | 29.8% |
| 2156904 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.79 | 74.0 | 5.31e-01 | 100.0% | 65.5% |
| 4870099 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.79 | 74.0 | 4.76e-01 | 100.0% | 27.3% |
| 1761798 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.78 | 73.0 | 4.73e-01 | 100.0% | 27.5% |
| 3965126 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.77 | 73.0 | 5.09e-01 | 100.0% | 38.7% |
| 4411442 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.77 | 73.0 | 4.66e-01 | 100.0% | 26.4% |
| 2841805 | 5084.5.3.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › MtrB_PioB | 0.77 | 71.0 | 4.48e-01 | 100.0% | 22.2% |
| 3965708 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.76 | 58.0 | 4.72e-01 | 97.7% | 44.2% |
| 3966904 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.75 | 67.0 | 4.20e-01 | 100.0% | 19.1% |
| 3964588 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.75 | 66.0 | 4.87e-01 | 100.0% | 39.5% |
| 3967768 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.73 | 69.0 | 4.24e-01 | 100.0% | 37.9% |
| 4823574 | 4030.1.1.1 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B | 0.72 | 57.0 | 5.37e-01 | 94.7% | 69.2% |
| 4345340 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.72 | 63.0 | 4.71e-01 | 94.0% | 40.6% |
| 3964572 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.72 | 62.0 | 4.69e-01 | 96.2% | 41.3% |
| 3974124 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.72 | 55.0 | 4.28e-01 | 97.7% | 38.5% |
| 4136508 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.71 | 66.0 | 4.79e-01 | 97.0% | 48.5% |
| 3100974 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.71 | 66.0 | 5.64e-01 | 100.0% | 71.6% |
| 3406726 | 5087.3.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C | 0.71 | 64.0 | 4.87e-01 | 100.0% | 43.7% |
| 4217278 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.70 | 65.0 | 4.78e-01 | 97.7% | 48.9% |
| 4150627 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.70 | 64.0 | 4.79e-01 | 97.0% | 45.1% |
| 4039744 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.70 | 65.0 | 4.72e-01 | 97.0% | 42.2% |
| 3967388 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.70 | 64.0 | 4.71e-01 | 96.2% | 42.5% |
| 4669999 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.70 | 63.0 | 4.75e-01 | 96.2% | 42.4% |
| 4234836 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.70 | 63.0 | 4.74e-01 | 96.2% | 42.6% |
| 3941948 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.70 | 64.0 | 4.71e-01 | 97.7% | 41.3% |
| 4379627 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.70 | 64.0 | 4.78e-01 | 97.7% | 42.9% |
| 4668983 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.69 | 54.0 | 5.01e-01 | 94.7% | 66.3% |
| 4643284 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.69 | 63.0 | 4.71e-01 | 97.0% | 43.5% |
| 3979319 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.69 | 63.0 | 4.75e-01 | 96.2% | 44.7% |
| 4377115 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.69 | 63.0 | 3.65e-01 | 96.2% | 12.3% |
| 4669372 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.69 | 63.0 | 4.70e-01 | 97.0% | 44.2% |
| 4437932 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.69 | 63.0 | 4.59e-01 | 96.2% | 40.3% |
| 4162922 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.69 | 64.0 | 4.72e-01 | 97.7% | 42.9% |
| 4191031 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.69 | 63.0 | 4.71e-01 | 97.7% | 42.9% |
| 3838102 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.68 | 63.0 | 4.28e-01 | 100.0% | 37.4% |
| 3511259 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.68 | 61.0 | 4.64e-01 | 96.2% | 46.7% |
| 4556738 | 7503.1.1.1 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG | 0.68 | 50.0 | 4.06e-01 | 75.9% | 42.6% |
| 3965061 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.68 | 62.0 | 4.90e-01 | 97.0% | 50.8% |
| 3916711 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.67 | 57.0 | 3.99e-01 | 91.0% | 88.6% |
| 4419134 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.66 | 60.0 | 4.58e-01 | 96.2% | 44.8% |
| 4449332 | 5084.5.1.18 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C | 0.66 | 59.0 | 4.29e-01 | 97.7% | 37.0% |
| 3398781 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.66 | 55.0 | 4.30e-01 | 90.2% | 46.7% |
| 4343144 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.66 | 62.0 | 3.92e-01 | 100.0% | 26.4% |
| 4025861 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.65 | 50.0 | 4.59e-01 | 96.2% | 62.4% |
| 4677412 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.65 | 57.0 | 4.27e-01 | 94.7% | 40.9% |
| 4333087 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.65 | 61.0 | 4.38e-01 | 100.0% | 44.5% |
| 4332907 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.65 | 60.0 | 4.31e-01 | 100.0% | 41.1% |
| 139979 | 5084.2.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPT-like › OMPT-like › Omptin | 0.64 | 55.0 | 4.15e-01 | 89.5% | 40.9% |
| 4145268 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.64 | 60.0 | 3.90e-01 | 100.0% | 26.5% |
| 4244652 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.64 | 59.0 | 4.12e-01 | 99.2% | 33.1% |
| 3977398 | 5084.1.1.16 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom | 0.64 | 50.0 | 4.67e-01 | 82.0% | 67.5% |
| 4010029 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 57.0 | 4.31e-01 | 97.7% | 42.6% |
| 3971932 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.61 | 56.0 | 3.53e-01 | 97.7% | 22.4% |
| 3277579 | 11.13.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like | 0.60 | 45.0 | 3.46e-01 | 77.4% | 80.0% |
| 3616128 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.59 | 52.0 | 4.18e-01 | 98.5% | 49.6% |
| 4224449 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.59 | 38.0 | 3.52e-01 | 82.0% | 50.0% |
| 1502527 | 5089.1.1.4 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF_1 | 0.58 | 42.0 | 3.24e-01 | 74.4% | 59.4% |
| 3970312 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.58 | 42.0 | 3.83e-01 | 93.2% | 55.6% |
| 4180622 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.57 | 50.0 | 3.82e-01 | 97.0% | 62.8% |
| 2799871 | 5089.1.1.2 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF | 0.56 | 44.0 | 3.28e-01 | 82.0% | 67.7% |
| 3388060 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.56 | 47.0 | 4.15e-01 | 93.2% | 63.0% |
| 4983434 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.55 | 50.0 | 4.20e-01 | 99.2% | 79.5% |
| 4975538 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.54 | 49.0 | 4.18e-01 | 99.2% | 78.1% |
| 5077736 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.54 | 49.0 | 4.12e-01 | 97.7% | 78.2% |
| 3530920 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.54 | 43.0 | 3.77e-01 | 86.5% | 63.4% |
| 3285849 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.54 | 49.0 | 4.04e-01 | 100.0% | 76.6% |
| 4984054 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.54 | 49.0 | 4.12e-01 | 98.5% | 78.2% |
| 4971888 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.53 | 49.0 | 4.03e-01 | 99.2% | 79.6% |
| 3165475 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.53 | 43.0 | 4.11e-01 | 94.7% | 73.4% |
| 5048005 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.52 | 46.0 | 3.99e-01 | 100.0% | 80.0% |
| 3837948 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.52 | 39.0 | 3.49e-01 | 81.2% | 55.3% |
| 3839285 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.52 | 39.0 | 3.56e-01 | 81.2% | 62.7% |
| 3840054 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.52 | 42.0 | 4.15e-01 | 96.2% | 81.4% |
| 5022052 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.51 | 47.0 | 3.97e-01 | 100.0% | 80.9% |
| 3875620 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.51 | 42.0 | 3.77e-01 | 94.7% | 62.1% |
| 5041649 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 46.0 | 3.85e-01 | 100.0% | 73.9% |
D6
medium
residues 577-708
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14905.13 best | OMP_b-brl_3 | 33.9 | 2.60e-08 | 100.0% | 27.9% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.81 | 72.0 | 4.50e-01 | 100.0% | 19.4% |
| 3cslA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.79 | 75.0 | 4.67e-01 | 100.0% | 28.5% |
| 1by5A02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.76 | 62.0 | 3.99e-01 | 100.0% | 20.4% |
| 3fhhA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.74 | 70.0 | 4.61e-01 | 100.0% | 27.0% |
| 2w16A03 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.72 | 62.0 | 4.00e-01 | 100.0% | 22.1% |
| 1fepA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.71 | 66.0 | 4.30e-01 | 100.0% | 24.9% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.71 | 65.0 | 4.42e-01 | 100.0% | 33.3% |
| 4aipC02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.70 | 62.0 | 3.99e-01 | 100.0% | 22.2% |
| 3efmA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.66 | 55.0 | 3.77e-01 | 100.0% | 26.8% |
| 3v89A02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.64 | 60.0 | 3.83e-01 | 100.0% | 22.6% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.64 | 37.0 | 3.62e-01 | 72.7% | 51.0% |
| 1xkwA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.64 | 59.0 | 3.87e-01 | 100.0% | 29.2% |
| 2vdfA00 | 2.40.128.100 | Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin | 0.61 | 50.0 | 4.15e-01 | 100.0% | 50.7% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 32.0 | 3.33e-01 | 73.5% | 52.7% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.60 | 56.0 | 4.47e-01 | 100.0% | 60.0% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.60 | 56.0 | 4.36e-01 | 100.0% | 59.9% |
| 4eg9A00 | 2.50.20.40 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.56 | 41.0 | 3.39e-01 | 95.5% | 43.3% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.53 | 39.0 | 3.57e-01 | 100.0% | 56.9% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.53 | 49.0 | 3.72e-01 | 100.0% | 44.1% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 38.0 | 3.65e-01 | 93.9% | 67.1% |
| 1vpbA01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.50 | 41.0 | 3.45e-01 | 88.6% | 69.3% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1760802 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.86 | 81.0 | 5.40e-01 | 100.0% | 33.5% |
| 3971984 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.82 | 71.0 | 4.71e-01 | 100.0% | 26.1% |
| 1717339 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.79 | 74.0 | 4.66e-01 | 100.0% | 28.1% |
| 3391818 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.78 | 47.0 | 5.46e-01 | 78.8% | 81.8% |
| 4256431 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.76 | 71.0 | 4.67e-01 | 100.0% | 28.0% |
| None | — | 0.75 | 70.0 | 4.68e-01 | 100.0% | 28.9% | |
| 4870099 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.75 | 69.0 | 4.44e-01 | 100.0% | 23.2% |
| 3966904 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.75 | 70.0 | 4.36e-01 | 100.0% | 23.8% |
| 3971477 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.73 | 69.0 | 4.35e-01 | 100.0% | 22.0% |
| 4371754 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.73 | 69.0 | 4.39e-01 | 100.0% | 24.8% |
| 1760411 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.73 | 40.0 | 4.98e-01 | 90.9% | 87.7% |
| 3967768 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.72 | 67.0 | 4.13e-01 | 100.0% | 27.0% |
| 3979654 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.70 | 65.0 | 4.18e-01 | 100.0% | 24.8% |
| 2393529 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.67 | 56.0 | 3.64e-01 | 88.6% | 53.3% |
| 1883909 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.64 | 59.0 | 3.68e-01 | 100.0% | 25.7% |
| 1718522 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.64 | 59.0 | 3.87e-01 | 100.0% | 29.2% |
| 4358482 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.63 | 59.0 | 3.61e-01 | 100.0% | 27.7% |
| 4219386 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.62 | 58.0 | 4.15e-01 | 100.0% | 58.2% |
| 3965061 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.62 | 57.0 | 4.53e-01 | 100.0% | 60.0% |
| 3942050 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.58 | 53.0 | 3.97e-01 | 97.0% | 51.5% |
| 3965621 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.56 | 51.0 | 3.18e-01 | 100.0% | 23.4% |
| 4181051 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.55 | 46.0 | 3.12e-01 | 89.4% | 59.4% |
| 2799871 | 5089.1.1.2 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF | 0.54 | 42.0 | 3.15e-01 | 80.3% | 66.8% |
| 3565137 | 7026.1.1.14 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › BLTP3A_B | 0.54 | 46.0 | 2.91e-01 | 93.2% | 23.0% |
| 4383723 | 5087.3.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C | 0.54 | 46.0 | 3.46e-01 | 90.9% | 92.1% |
| 3620009 | 7026.1.1.14 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › BLTP3A_B | 0.54 | 44.0 | 3.47e-01 | 93.2% | 41.4% |
| 4973777 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.53 | 36.0 | 3.44e-01 | 100.0% | 58.8% |
| 3716267 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.53 | 44.0 | 3.24e-01 | 96.2% | 35.1% |
| 3850354 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.51 | 40.0 | 4.07e-01 | 93.2% | 83.1% |
| 4823574 | 4030.1.1.1 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B | 0.51 | 38.0 | 3.65e-01 | 93.2% | 66.7% |
D7
medium
residues 709-808
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bh3A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.86 | 58.0 | 4.06e-01 | 100.0% | 24.2% |
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.81 | 75.0 | 4.49e-01 | 100.0% | 19.9% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.80 | 75.0 | 4.46e-01 | 100.0% | 19.0% |
| 8p97A01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.79 | 73.0 | 4.43e-01 | 100.0% | 18.7% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.77 | 43.0 | 5.49e-01 | 88.0% | 94.9% |
| 1kmoA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.76 | 71.0 | 4.39e-01 | 100.0% | 19.7% |
| 4aipC02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.75 | 69.0 | 4.27e-01 | 100.0% | 24.2% |
| 3v89A02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.74 | 68.0 | 4.12e-01 | 100.0% | 25.8% |
| 3bdrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.73 | 46.0 | 3.87e-01 | 98.0% | 40.4% |
| 3fhhA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.71 | 66.0 | 4.12e-01 | 100.0% | 24.1% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.69 | 54.0 | 4.05e-01 | 99.0% | 34.3% |
| 2gr7A00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.68 | 44.0 | 4.44e-01 | 96.0% | 65.3% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.61 | 54.0 | 3.93e-01 | 100.0% | 40.2% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.58 | 51.0 | 4.28e-01 | 97.0% | 61.5% |
| 2wyhB06 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.57 | 52.0 | 3.74e-01 | 100.0% | 71.4% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.57 | 43.0 | 3.94e-01 | 81.0% | 60.3% |
| 2oojA00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.56 | 42.0 | 3.88e-01 | 97.0% | 61.1% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 45.0 | 3.90e-01 | 96.0% | 56.8% |
| 3d9rB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 36.0 | 3.28e-01 | 72.0% | 48.9% |
| 3tekA00 | 3.30.470.50 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.55 | 41.0 | 3.67e-01 | 79.0% | 100.0% |
| 1em2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 46.0 | 3.64e-01 | 100.0% | 44.9% |
| 4i0nA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.53 | 44.0 | 3.41e-01 | 96.0% | 87.1% |
| 6jqlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 43.0 | 3.63e-01 | 93.0% | 84.8% |
| 1q42A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.28e-01 | 81.0% | 49.7% |
| 5kbzB00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.51 | 45.0 | 3.16e-01 | 97.0% | 40.0% |
| 4k15A00 | 2.60.40.3860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.69e-01 | 90.0% | 63.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1760440 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.78 | 74.0 | 4.54e-01 | 100.0% | 19.9% |
| 5065294 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.76 | 61.0 | 5.05e-01 | 99.0% | 50.0% |
| 3375268 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.76 | 49.0 | 3.77e-01 | 100.0% | 30.0% |
| 3965126 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.75 | 69.0 | 4.56e-01 | 100.0% | 30.3% |
| 4865042 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.74 | 69.0 | 4.32e-01 | 100.0% | 21.2% |
| 3978947 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.71 | 66.0 | 4.37e-01 | 100.0% | 26.1% |
| 4419134 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.71 | 65.0 | 4.61e-01 | 100.0% | 37.9% |
| 3812869 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.70 | 44.0 | 4.41e-01 | 98.0% | 63.0% |
| 3990496 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.69 | 38.0 | 4.51e-01 | 97.0% | 78.6% |
| 3976326 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.68 | 61.0 | 4.91e-01 | 100.0% | 52.8% |
| 3056279 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.67 | 52.0 | 4.43e-01 | 99.0% | 50.9% |
| 3414586 | 11.1.1.824 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Chitin_bind_4 | 0.65 | 41.0 | 4.23e-01 | 97.0% | 67.7% |
| 4285338 | 5087.1.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 | 0.65 | 55.0 | 4.34e-01 | 99.0% | 47.4% |
| 4008697 | 5084.5.1.22 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 | 0.62 | 56.0 | 3.82e-01 | 97.0% | 30.4% |
| 3202616 | 883.1.1.20 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like | 0.60 | 52.0 | 4.17e-01 | 100.0% | 72.1% |
| 3879969 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.58 | 51.0 | 4.10e-01 | 100.0% | 61.9% |
| 3967227 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.58 | 39.0 | 3.28e-01 | 96.0% | 38.3% |
| 5036637 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.58 | 53.0 | 3.76e-01 | 99.0% | 67.9% |
| 3703523 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.57 | 50.0 | 4.34e-01 | 99.0% | 76.2% |
| 5072979 | 222.1.1.9 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N | 0.57 | 42.0 | 3.66e-01 | 78.0% | 100.0% |
| 4581432 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.57 | 47.0 | 3.89e-01 | 91.0% | 63.3% |
| 3615537 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.54 | 47.0 | 4.20e-01 | 98.0% | 82.8% |
| 3540942 | 883.1.1.10 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_C2CD2L | 0.53 | 48.0 | 3.88e-01 | 99.0% | 63.7% |
| 4025179 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.53 | 46.0 | 3.68e-01 | 100.0% | 47.3% |
| 3724592 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 39.0 | 3.15e-01 | 87.0% | 40.0% |
| 3177221 | 3080.1.1.0 ↗ | a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins | 0.52 | 43.0 | 3.14e-01 | 91.0% | 67.4% |
| 3637860 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.52 | 38.0 | 3.06e-01 | 86.0% | 39.0% |
| 4292366 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.51 | 41.0 | 3.37e-01 | 97.0% | 47.3% |