←Back to structures
IMGVR_UViG_3300021963_003599-3300021963-Ga0222712_100232131
Arc-VirIMGVR_UViG_3300021963_003599-3300021963-Ga0222712_100232131
Identity
- Kingdom:
- archaea
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 29-73_144-160
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jn4A00 | 2.40.50.240 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like | 0.60 | 42.0 | 4.17e-01 | 98.4% | 69.7% |
| 2e5kA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 44.0 | 4.43e-01 | 85.5% | 84.4% |
| 3kfvA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 41.0 | 3.60e-01 | 87.1% | 51.0% |
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 45.0 | 4.47e-01 | 91.9% | 100.0% |
| 3uc4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 41.0 | 3.76e-01 | 83.9% | 89.4% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 38.0 | 3.65e-01 | 80.6% | 74.7% |
| 2b5uA03 | 3.10.380.10 | Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain | 0.52 | 46.0 | 3.94e-01 | 100.0% | 87.8% |
| 3pe0A03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 39.0 | 3.88e-01 | 90.3% | 81.2% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 33.0 | 3.37e-01 | 72.6% | 67.2% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 41.0 | 3.08e-01 | 91.9% | 64.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3703749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 40.0 | 4.01e-01 | 87.1% | 69.2% |
| 3211964 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.57 | 46.0 | 3.93e-01 | 90.3% | 83.7% |
| 3711282 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 39.0 | 4.10e-01 | 95.2% | 87.3% |
| 3718208 | 1.1.7.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ala_racemase_C | 0.55 | 45.0 | 3.50e-01 | 93.5% | 83.8% |
| 3828759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 35.0 | 3.85e-01 | 98.4% | 93.3% |
| 4015718 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.53 | 36.0 | 3.65e-01 | 72.6% | 88.3% |
| 3858981 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.52 | 37.0 | 3.59e-01 | 75.8% | 81.4% |
| 3213040 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.65e-01 | 88.7% | 73.0% |
| 3340222 | 3131.1.1.3 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRC | 0.52 | 35.0 | 2.87e-01 | 98.4% | 35.2% |
| 3914410 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.50 | 36.0 | 3.45e-01 | 77.4% | 79.7% |
D2
medium
residues 74-143
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h6uA00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.60 | 42.0 | 3.64e-01 | 97.1% | 45.6% |
| 2petA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 3.97e-01 | 100.0% | 62.6% |
| 7rskA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.70e-01 | 98.6% | 57.8% |
| 7o85C01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 4.19e-01 | 97.1% | 92.2% |
| 3bqjA01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.51 | 37.0 | 2.77e-01 | 100.0% | 28.2% |
| 4p25D01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.50 | 36.0 | 2.73e-01 | 100.0% | 28.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3394357 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 47.0 | 3.80e-01 | 100.0% | 48.5% |
| 3261455 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 41.0 | 3.34e-01 | 100.0% | 40.7% |
| 3184485 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.54 | 41.0 | 3.57e-01 | 97.1% | 52.8% |
| 4994864 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 46.0 | 3.77e-01 | 100.0% | 63.7% |
| 3511260 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.51 | 42.0 | 3.22e-01 | 97.1% | 56.3% |