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IMGVR_UViG_3300022188_000634-3300022188-Ga0190313_10018408

Arc-Vir

IMGVR_UViG_3300022188_000634-3300022188-Ga0190313_10018408

Identity

Kingdom:
archaea

Quality

66.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-123
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1urjA03 1.10.150.560 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.73 50.0 4.85e-01 75.7% 64.6%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.82e-01 71.6% 87.7%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.69 57.0 3.52e-01 89.2% 17.8%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 3.93e-01 73.0% 47.1%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 45.0 4.09e-01 74.3% 50.5%
1xx7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.65 50.0 3.85e-01 83.8% 57.0%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 44.0 2.91e-01 77.0% 91.7%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 41.0 3.34e-01 77.0% 37.4%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 41.0 3.86e-01 74.3% 56.4%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 3.32e-01 74.3% 81.8%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 46.0 4.74e-01 85.1% 90.3%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.59 47.0 3.97e-01 87.8% 87.4%
3ktdD02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.58 45.0 4.01e-01 85.1% 78.0%
1g4uS01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.56 41.0 3.44e-01 87.8% 44.9%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.56 50.0 3.17e-01 94.6% 30.2%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.52 35.0 3.30e-01 71.6% 78.2%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 38.0 3.57e-01 77.0% 86.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3896790 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 55.0 5.50e-01 74.3% 70.7%
3544646 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.79 54.0 5.57e-01 70.3% 100.0%
4025539 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.76 53.0 5.35e-01 73.0% 73.3%
5044229 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 52.0 5.65e-01 71.6% 90.0%
1309095 102.6.1.1 ↗ alpha arrays › HhH/H2TH › C-terminal domain in viral ssDNA binding protein › C-terminal domain in viral ssDNA binding protein › Viral_DNA_bp 0.73 50.0 4.38e-01 75.7% 48.6%
3055 102.6.1.1 ↗ alpha arrays › HhH/H2TH › C-terminal domain in viral ssDNA binding protein › C-terminal domain in viral ssDNA binding protein › Viral_DNA_bp 0.73 50.0 4.85e-01 75.7% 64.6%
4935180 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.70 52.0 4.71e-01 78.4% 75.0%
3330762 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.65 45.0 3.93e-01 75.7% 47.0%
3648687 604.12.1.89 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CDP-OH_P_transf 0.64 42.0 3.82e-01 85.1% 51.6%
3784566 604.1.1.191 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29057 0.62 43.0 3.91e-01 73.0% 83.0%
4541195 3755.3.1.470 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › T3SSipB 0.61 49.0 4.05e-01 86.5% 66.2%
3460130 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 40.0 3.94e-01 70.3% 92.5%
3668668 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.57 45.0 3.91e-01 90.5% 55.2%
4675231 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.55 45.0 3.86e-01 93.2% 55.8%
3945729 604.32.1.0 ↗ alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.55 48.0 4.05e-01 100.0% 100.0%
3962352 192.29.1.146 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF2231 0.54 44.0 3.49e-01 89.2% 66.0%
3725506 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 42.0 3.73e-01 87.8% 57.3%
5020645 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 43.0 2.93e-01 93.2% 39.3%