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IMGVR_UViG_3300022195_000397-3300022195-Ga0222625_14733174

Arc-Vir

IMGVR_UViG_3300022195_000397-3300022195-Ga0222625_14733174

Quality

93.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lufB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.81 62.0 4.72e-01 86.8% 35.7%
3hdvB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.78 65.0 4.94e-01 98.1% 39.7%
3i42A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.77 60.0 4.66e-01 96.2% 39.0%
1a2oA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.75 58.0 4.41e-01 86.8% 35.3%
3kyiB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.73 59.0 4.76e-01 96.2% 46.2%
5x5jA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.73 55.0 4.33e-01 86.8% 38.1%
3lteD00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.73 57.0 4.43e-01 88.7% 38.2%
3o03A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 63.0 4.03e-01 100.0% 31.5%
5idyA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 60.0 3.85e-01 96.2% 29.8%
7lzaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.72 53.0 4.19e-01 84.9% 37.3%
3eodA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.71 54.0 4.28e-01 86.8% 39.1%
3c97A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 52.0 5.13e-01 86.8% 77.6%
1xu9C00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 59.0 3.83e-01 100.0% 31.8%
3bl4A02 3.40.970.30 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains 0.69 54.0 5.55e-01 98.1% 100.0%
1p6qA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 54.0 4.22e-01 92.5% 38.0%
2gkgA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 52.0 4.06e-01 84.9% 36.1%
3cfyA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 51.0 3.99e-01 90.6% 35.4%
4nbrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 57.0 3.63e-01 96.2% 29.9%
4dadA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 56.0 4.23e-01 96.2% 38.3%
3cz5C00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 53.0 3.99e-01 96.2% 33.8%
3breB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 53.0 4.03e-01 98.1% 34.3%
2dgdA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 59.0 4.46e-01 100.0% 51.2%
3dugA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.67 58.0 3.66e-01 100.0% 73.3%
3snkA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 51.0 4.00e-01 98.1% 38.7%
1yt8A02 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.66 50.0 4.03e-01 84.9% 43.5%
2jfzA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 54.0 4.26e-01 96.2% 57.6%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 52.0 4.37e-01 90.6% 54.6%
4uxdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 55.0 3.56e-01 100.0% 60.9%
2ynmC03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.64 49.0 3.79e-01 88.7% 36.6%
5elmA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 48.0 3.97e-01 88.7% 67.0%
3lzdA01 3.40.50.11840 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 1 0.63 50.0 4.15e-01 88.7% 53.7%
1lssA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 45.0 3.53e-01 98.1% 33.3%
2gn0B01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 48.0 3.28e-01 90.6% 72.2%
1hyhA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 48.0 3.56e-01 86.8% 49.6%
3tixB02 3.40.1010.30 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 0.60 42.0 3.35e-01 86.8% 33.1%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 48.0 3.47e-01 98.1% 37.8%
4isyA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.60 51.0 3.37e-01 100.0% 24.7%
1vkfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 47.0 3.42e-01 92.5% 69.2%
4inaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 48.0 3.40e-01 100.0% 28.1%
3dl2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 3.51e-01 90.6% 46.0%
3luaA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 44.0 3.53e-01 86.8% 36.8%
2qezE03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 48.0 3.07e-01 98.1% 84.0%
1id1A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 3.48e-01 100.0% 33.3%
3wg9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 47.0 3.62e-01 98.1% 47.9%
3i6eA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 48.0 3.15e-01 96.2% 43.9%
1a04A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 47.0 3.74e-01 100.0% 62.9%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 48.0 3.40e-01 96.2% 49.4%
2p9bA02 3.30.110.90 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Amidohydrolase 0.57 44.0 3.83e-01 86.8% 89.5%
3l9wA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 43.0 3.03e-01 81.1% 35.6%
2yxlA04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 45.0 3.20e-01 98.1% 35.6%
3dzvA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 39.0 2.63e-01 86.8% 16.7%
2ixaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 43.0 3.24e-01 100.0% 43.2%
3waeB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 39.0 3.02e-01 84.9% 34.2%
2nxwA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.53 43.0 3.10e-01 100.0% 28.9%
4azsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 40.0 2.89e-01 98.1% 33.8%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 38.0 3.21e-01 84.9% 45.0%
4g4pA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 40.0 3.52e-01 98.1% 56.2%
3gzdA03 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 40.0 2.91e-01 98.1% 29.9%
2xd3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 37.0 2.75e-01 86.8% 66.3%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927526 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.89 83.0 5.22e-01 100.0% 22.6%
3972497 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.79 61.0 4.56e-01 86.8% 33.8%
4937805 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.76 62.0 4.65e-01 98.1% 36.9%
5022160 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.76 58.0 4.40e-01 84.9% 34.6%
3283495 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.76 62.0 4.64e-01 92.5% 38.5%
3257809 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.76 59.0 4.32e-01 86.8% 33.1%
3728960 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.75 59.0 4.11e-01 88.7% 26.8%
3941477 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.74 56.0 4.29e-01 86.8% 34.6%
5046743 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.73 58.0 4.48e-01 96.2% 38.4%
3386866 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.73 55.0 4.41e-01 88.7% 40.0%
387657 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.73 57.0 4.44e-01 88.7% 38.5%
3958063 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 54.0 4.52e-01 100.0% 46.3%
3988213 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.72 58.0 4.32e-01 96.2% 33.8%
5058090 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.72 54.0 4.28e-01 84.9% 39.2%
147673 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.71 56.0 4.22e-01 86.8% 37.8%
3954656 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.71 60.0 3.84e-01 100.0% 29.3%
3648544 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.70 54.0 4.35e-01 86.8% 44.5%
4514723 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.69 53.0 4.13e-01 90.6% 36.2%
4143978 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.69 54.0 3.99e-01 96.2% 31.0%
3727905 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.68 56.0 3.64e-01 98.1% 29.5%
3591005 2003.1.1.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › OCD_Mu_crystall 0.68 51.0 3.56e-01 84.9% 35.8%
3916967 2003.1.1.148 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short, KR 0.67 56.0 3.54e-01 98.1% 27.3%
1710397 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.67 53.0 3.89e-01 98.1% 30.1%
3780897 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.66 51.0 3.37e-01 96.2% 18.8%
3550235 2007.1.3.34 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › PDE8A_N 0.66 53.0 3.97e-01 94.3% 34.0%
3476375 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.65 54.0 3.83e-01 100.0% 45.4%
4958228 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.65 50.0 3.02e-01 98.1% 12.3%
3164407 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.64 52.0 3.13e-01 98.1% 12.6%
4975005 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 50.0 3.25e-01 100.0% 31.1%
None 0.62 50.0 3.14e-01 92.5% 22.5%
4492169 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.62 51.0 3.68e-01 100.0% 34.7%
5040125 2003.1.5.71 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.61 51.0 3.18e-01 100.0% 16.7%
4606779 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.61 46.0 3.50e-01 96.2% 32.0%
4478130 2003.1.5.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.60 48.0 3.46e-01 100.0% 37.6%
1678143 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.59 45.0 3.68e-01 84.9% 48.2%
3000380 2003.1.5.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.59 45.0 3.99e-01 92.5% 75.6%
4965089 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.57 48.0 3.37e-01 100.0% 35.2%
5043221 2004.1.1.43 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.57 46.0 3.16e-01 100.0% 35.3%
5019770 7597.1.1.0 a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.57 42.0 3.59e-01 92.5% 46.4%
4263926 7523.1.1.14 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › TctC 0.56 39.0 3.19e-01 79.2% 47.5%
5010073 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.55 44.0 3.25e-01 98.1% 40.6%
4949763 2003.1.1.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ldh_1_N 0.54 45.0 3.37e-01 92.5% 47.4%
3952847 320.2.1.0 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain 0.53 36.0 3.36e-01 75.5% 49.3%
4241288 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.53 41.0 2.92e-01 100.0% 25.0%
5037611 7523.1.1.5 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT 0.52 40.0 3.36e-01 94.3% 46.4%
4991604 7523.1.1.5 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT 0.51 40.0 3.34e-01 94.3% 48.2%