←Back to structures
IMGVR_UViG_3300022547_000006-3300022547-Ga0212126_10006834
Arc-VirIMGVR_UViG_3300022547_000006-3300022547-Ga0212126_10006834
Identity
- Kingdom:
- archaea
Quality
53.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 81-184
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.66 | 45.0 | 4.76e-01 | 98.1% | 78.7% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 56.0 | 4.78e-01 | 97.1% | 96.3% |
| 4e6fA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.63 | 57.0 | 4.81e-01 | 100.0% | 78.4% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.62 | 51.0 | 4.79e-01 | 89.4% | 83.6% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.60 | 36.0 | 3.83e-01 | 93.3% | 68.1% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.60 | 38.0 | 4.18e-01 | 70.2% | 80.5% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.59 | 35.0 | 3.47e-01 | 70.2% | 55.4% |
| 6jb7A01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.59 | 50.0 | 4.37e-01 | 93.3% | 70.1% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.58 | 41.0 | 3.66e-01 | 74.0% | 89.7% |
| 4ds2B00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 47.0 | 4.14e-01 | 89.4% | 74.4% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 49.0 | 4.47e-01 | 94.2% | 80.7% |
| 1ukxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 48.0 | 4.37e-01 | 91.3% | 82.5% |
| 1gydB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 48.0 | 3.41e-01 | 92.3% | 77.5% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 50.0 | 3.65e-01 | 98.1% | 96.9% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.56 | 39.0 | 3.52e-01 | 83.7% | 50.3% |
| 3we5A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 48.0 | 4.34e-01 | 94.2% | 78.0% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.55 | 40.0 | 3.68e-01 | 78.8% | 57.1% |
| 2f4wB00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 45.0 | 3.99e-01 | 89.4% | 66.4% |
| 1kpsC00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 46.0 | 4.12e-01 | 95.2% | 71.2% |
| 1q7lA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 43.0 | 3.47e-01 | 83.7% | 77.6% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.54 | 48.0 | 3.97e-01 | 100.0% | 94.8% |
| 1zuoB00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 45.0 | 4.13e-01 | 93.3% | 87.9% |
| 1tu5A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.93e-01 | 79.8% | 75.0% |
| 2xu8A00 | 3.90.70.190 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) | 0.53 | 35.0 | 3.43e-01 | 86.5% | 59.5% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 37.0 | 3.43e-01 | 75.0% | 82.0% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.51 | 42.0 | 4.31e-01 | 89.4% | 93.9% |
| 3apuB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 41.0 | 3.50e-01 | 86.5% | 87.8% |
| 1gpqB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.51 | 38.0 | 3.63e-01 | 79.8% | 94.5% |
| 2obdA01 | 3.15.20.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 | 0.51 | 44.0 | 3.33e-01 | 100.0% | 55.8% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.51 | 36.0 | 3.17e-01 | 87.5% | 49.4% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.50 | 29.0 | 3.52e-01 | 93.3% | 100.0% |
| 3it8D01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.50 | 41.0 | 3.47e-01 | 89.4% | 81.7% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3818311 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.65 | 53.0 | 4.62e-01 | 89.4% | 73.1% |
| 3739321 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.65 | 57.0 | 4.84e-01 | 100.0% | 98.9% |
| 3879830 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.65 | 53.0 | 4.80e-01 | 89.4% | 80.7% |
| 3488509 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.65 | 56.0 | 4.69e-01 | 96.2% | 100.0% |
| 3397367 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.64 | 56.0 | 4.86e-01 | 97.1% | 96.4% |
| 3246034 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.64 | 53.0 | 4.68e-01 | 89.4% | 97.3% |
| 3990414 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 54.0 | 4.91e-01 | 93.3% | 83.6% |
| 3472659 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 52.0 | 4.73e-01 | 89.4% | 83.6% |
| 3618875 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 52.0 | 4.78e-01 | 89.4% | 83.0% |
| 3933484 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.63 | 56.0 | 4.85e-01 | 100.0% | 96.4% |
| 3258377 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.62 | 47.0 | 4.96e-01 | 100.0% | 91.1% |
| 4014135 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.62 | 56.0 | 4.63e-01 | 98.1% | 87.8% |
| 3512529 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.62 | 55.0 | 4.75e-01 | 97.1% | 97.5% |
| 3937237 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.62 | 55.0 | 4.78e-01 | 100.0% | 96.4% |
| 3305149 | 213.1.1.78 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF27744 | 0.62 | 56.0 | 4.20e-01 | 99.0% | 90.8% |
| 3271023 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.62 | 53.0 | 4.50e-01 | 93.3% | 98.8% |
| 3591671 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.62 | 53.0 | 4.71e-01 | 95.2% | 80.0% |
| 3632113 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.61 | 52.0 | 5.03e-01 | 93.3% | 87.8% |
| 4531971 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.58 | 51.0 | 4.28e-01 | 96.2% | 100.0% |
| 3991810 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.58 | 49.0 | 4.40e-01 | 93.3% | 73.3% |
| 2526491 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.58 | 52.0 | 4.59e-01 | 100.0% | 86.1% |
| 4284039 | 11.1.4.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SOP4 | 0.58 | 45.0 | 3.98e-01 | 84.6% | 91.0% |
| 4023469 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 49.0 | 4.48e-01 | 95.2% | 76.4% |
| 4977467 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 47.0 | 4.73e-01 | 100.0% | 90.5% |
| 3189622 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.56 | 50.0 | 3.98e-01 | 98.1% | 55.8% |
| 3590398 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.55 | 42.0 | 2.61e-01 | 97.1% | 13.5% |
| 3173109 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 40.0 | 3.76e-01 | 76.0% | 76.0% |
| 4002789 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 35.0 | 3.53e-01 | 70.2% | 63.8% |
| 3254677 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.54 | 44.0 | 4.35e-01 | 88.5% | 90.0% |
| 5060374 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 40.0 | 2.84e-01 | 97.1% | 23.0% |
| 3604446 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.54 | 46.0 | 2.87e-01 | 97.1% | 21.8% |
| 2724383 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.53 | 43.0 | 4.54e-01 | 95.2% | 100.0% |
| 4928275 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.53 | 39.0 | 2.87e-01 | 97.1% | 25.8% |
| 3511200 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.52 | 39.0 | 4.21e-01 | 94.2% | 96.5% |
| 3494434 | 3435.1.1.8 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DEPDC5_CTD | 0.52 | 40.0 | 3.74e-01 | 100.0% | 65.9% |
| 4346250 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 44.0 | 4.03e-01 | 96.2% | 92.9% |
| 3552042 | 4099.1.1.17 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM2 | 0.51 | 34.0 | 3.83e-01 | 84.6% | 90.0% |
| 4277985 | 2004.1.1.481 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 | 0.51 | 45.0 | 3.05e-01 | 98.1% | 28.2% |
| 3698253 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.50 | 41.0 | 2.69e-01 | 89.4% | 42.1% |
| 1219851 | 233.1.1.7 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › 2L_N_poxvirus | 0.50 | 41.0 | 3.49e-01 | 90.4% | 81.7% |
D2
high
residues 194-274
D3
high
residues 292-345