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IMGVR_UViG_3300022552_000376-3300022552-Ga0212118_1000053914
Arc-VirIMGVR_UViG_3300022552_000376-3300022552-Ga0212118_1000053914
Identity
- Kingdom:
- archaea
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-159
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.62 | 32.0 | 4.31e-01 | 96.1% | 100.0% |
| 1a10I00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.60 | 31.0 | 4.15e-01 | 96.1% | 98.4% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 33.0 | 3.79e-01 | 78.3% | 78.9% |
| 2hfzA01 | 3.30.70.2840 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Flavivirus RNA-directed RNA polymerase, thumb domain | 0.55 | 28.0 | 3.27e-01 | 100.0% | 67.4% |
| 2pb9A00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.53 | 36.0 | 3.20e-01 | 96.9% | 47.8% |
| 2zyzB02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 35.0 | 3.96e-01 | 88.4% | 91.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3645028 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.57 | 34.0 | 4.17e-01 | 96.1% | 98.7% |
| 3905518 | 11.1.1.587 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like | 0.55 | 31.0 | 3.18e-01 | 96.9% | 55.0% |
| 3203184 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.51 | 31.0 | 3.25e-01 | 81.4% | 65.0% |
| 3566123 | 1.1.7.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Orn_DAP_Arg_deC | 0.50 | 33.0 | 3.02e-01 | 77.5% | 47.2% |
| 3679502 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.50 | 31.0 | 3.77e-01 | 96.9% | 98.8% |
D2
medium
residues 1-30_162-206
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.73 | 57.0 | 4.82e-01 | 85.3% | 98.4% |
| 2o55A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.69 | 54.0 | 3.74e-01 | 85.3% | 87.4% |
| 2e87A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 53.0 | 3.96e-01 | 86.7% | 77.4% |
| 1udxA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 51.0 | 3.94e-01 | 85.3% | 86.2% |
| 5gizA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.63 | 47.0 | 3.97e-01 | 80.0% | 76.7% |
| 1iukA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 49.0 | 4.05e-01 | 84.0% | 81.6% |
| 3o3mD03 | 3.40.50.11900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 47.0 | 3.84e-01 | 81.3% | 87.7% |
| 1p3y100 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.63 | 48.0 | 3.72e-01 | 82.7% | 86.5% |
| 5awhA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 47.0 | 3.64e-01 | 85.3% | 74.3% |
| 3tsmA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 47.0 | 3.24e-01 | 84.0% | 68.2% |
| 3pdiB02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.58 | 44.0 | 3.77e-01 | 82.7% | 75.6% |
| 5fclE01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.57 | 43.0 | 4.13e-01 | 84.0% | 93.3% |
| 2h8gA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.56 | 43.0 | 3.10e-01 | 85.3% | 82.9% |
| 3guvA00 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.56 | 45.0 | 3.67e-01 | 89.3% | 79.2% |
| 3mmzC00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.56 | 41.0 | 3.31e-01 | 81.3% | 85.8% |
| 3lzdA02 | 3.40.50.11850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 2 | 0.55 | 44.0 | 3.94e-01 | 88.0% | 75.2% |
| 1vq2A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 42.0 | 3.31e-01 | 84.0% | 83.2% |
| 3p5jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 42.0 | 3.24e-01 | 85.3% | 82.6% |
| 6h1wA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 40.0 | 3.46e-01 | 78.7% | 66.7% |
| 3ihjA03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 44.0 | 3.13e-01 | 92.0% | 43.9% |
| 5k2mA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 43.0 | 4.00e-01 | 90.7% | 78.1% |
| 5iipA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 38.0 | 3.29e-01 | 80.0% | 56.9% |
| 3viuA04 | 3.90.650.10 | Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain | 0.50 | 39.0 | 3.00e-01 | 84.0% | 84.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 162906 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.69 | 54.0 | 3.74e-01 | 85.3% | 87.4% |
| 4084876 | 2004.1.1.91 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LpxK | 0.68 | 54.0 | 3.83e-01 | 86.7% | 76.8% |
| 5081250 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 52.0 | 4.46e-01 | 84.0% | 84.0% |
| 3593921 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 52.0 | 3.97e-01 | 85.3% | 78.4% |
| 4033815 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.66 | 57.0 | 4.18e-01 | 98.7% | 92.9% |
| 3587520 | 301.1.1.6 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › MRM3-like_sub_bind | 0.66 | 46.0 | 4.19e-01 | 73.3% | 76.0% |
| 4541215 | 2007.1.14.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 | 0.65 | 49.0 | 4.23e-01 | 81.3% | 80.0% |
| 4267211 | 2004.1.1.91 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LpxK | 0.65 | 50.0 | 3.57e-01 | 85.3% | 70.8% |
| 4275419 | 2004.1.1.91 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LpxK | 0.65 | 50.0 | 3.54e-01 | 85.3% | 68.0% |
| 4993183 | 2004.1.1.86 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FeoB_N | 0.63 | 48.0 | 3.66e-01 | 85.3% | 75.8% |
| 3279380 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.61 | 46.0 | 3.89e-01 | 81.3% | 70.8% |
| 1866050 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.61 | 47.0 | 3.59e-01 | 85.3% | 70.4% |
| 3673147 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.61 | 48.0 | 4.16e-01 | 85.3% | 86.1% |
| 3742308 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.61 | 45.0 | 3.46e-01 | 78.7% | 63.6% |
| 4929957 | 7595.1.1.1 ↗ | a/b three-layered sandwiches › B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit › CdhD | 0.60 | 48.0 | 4.00e-01 | 88.0% | 93.3% |
| 4945524 | 7513.1.1.1 ↗ | a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD | 0.60 | 46.0 | 3.12e-01 | 84.0% | 96.4% |
| 2519682 | 2007.1.14.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA | 0.59 | 44.0 | 3.72e-01 | 81.3% | 69.1% |
| 3814933 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.59 | 45.0 | 3.66e-01 | 84.0% | 96.0% |
| 4459932 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.59 | 50.0 | 3.81e-01 | 97.3% | 56.6% |
| 3842698 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.59 | 45.0 | 3.07e-01 | 85.3% | 42.0% |
| None | — | 0.58 | 45.0 | 3.07e-01 | 85.3% | 42.0% | |
| 4581264 | 7512.1.1.16 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth | 0.58 | 49.0 | 3.25e-01 | 98.7% | 54.5% |
| 4511043 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.58 | 43.0 | 3.79e-01 | 80.0% | 93.0% |
| 3891796 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.58 | 44.0 | 3.69e-01 | 82.7% | 97.0% |
| 3781093 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.58 | 42.0 | 3.08e-01 | 76.0% | 63.5% |
| 5016441 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.58 | 43.0 | 3.37e-01 | 81.3% | 63.5% |
| 4245472 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.58 | 44.0 | 3.66e-01 | 82.7% | 94.8% |
| 3603766 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.57 | 47.0 | 3.37e-01 | 92.0% | 61.5% |
| 5025729 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 44.0 | 2.99e-01 | 93.3% | 48.2% |
| 4662521 | 2484.1.1.146 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 | 0.55 | 42.0 | 2.91e-01 | 85.3% | 50.9% |
| 3940742 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.55 | 41.0 | 3.58e-01 | 82.7% | 95.8% |
| 3997892 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.55 | 41.0 | 3.54e-01 | 81.3% | 95.2% |
| 4332913 | 2484.1.1.146 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 | 0.54 | 42.0 | 2.84e-01 | 85.3% | 25.2% |
| 5055138 | 232.1.1.2 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › ADI | 0.54 | 43.0 | 2.93e-01 | 85.3% | 63.7% |
| 3395007 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 43.0 | 3.20e-01 | 89.3% | 50.7% |
| 3897539 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.54 | 46.0 | 2.95e-01 | 98.7% | 34.1% |
| 3978142 | 7565.1.1.1 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase | 0.54 | 46.0 | 3.77e-01 | 96.0% | 72.1% |
| 4937553 | 2008.1.1.31 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC | 0.52 | 39.0 | 3.55e-01 | 86.7% | 99.1% |
| 5002475 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 46.0 | 2.97e-01 | 100.0% | 38.6% |
| 4514424 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 45.0 | 3.03e-01 | 100.0% | 42.6% |
| 4950545 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 44.0 | 3.65e-01 | 97.3% | 55.7% |
| 3587332 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 44.0 | 3.04e-01 | 100.0% | 31.2% |
| 4374825 | 7516.1.1.11 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 | 0.51 | 40.0 | 2.94e-01 | 88.0% | 74.3% |
| 4966168 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 44.0 | 2.89e-01 | 100.0% | 39.7% |