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IMGVR_UViG_3300022554_000046-3300022554-Ga0212093_10044822

Arc-Vir

IMGVR_UViG_3300022554_000046-3300022554-Ga0212093_10044822

Quality

83.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-109_135-223
PDB
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3877415 604.1.1.118 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N 0.54 30.0 3.31e-01 71.2% 66.3%
4565535 141.1.1.3 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.52 27.0 2.30e-01 70.7% 31.1%
3953677 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.52 25.0 2.98e-01 94.4% 63.7%
D2 medium residues 224-303
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20530.4 best DUF6745 34.1 2.40e-08 100.0% 36.9%
D3 medium residues 304-377
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.71 59.0 3.73e-01 90.5% 34.6%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.69 51.0 3.24e-01 78.4% 29.9%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 48.0 3.98e-01 87.8% 43.4%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 54.0 3.60e-01 89.2% 49.2%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.66 55.0 3.42e-01 91.9% 30.7%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 49.0 3.30e-01 87.8% 54.6%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 53.0 4.07e-01 97.3% 77.7%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 4.03e-01 90.5% 90.8%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 50.0 3.37e-01 94.6% 93.3%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.60 42.0 3.16e-01 78.4% 30.1%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 48.0 3.16e-01 89.2% 46.3%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.59 45.0 4.25e-01 83.8% 97.8%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 47.0 3.95e-01 86.5% 75.4%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.59 46.0 3.18e-01 89.2% 43.4%
5ksdA04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.59 43.0 3.51e-01 79.7% 58.1%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 3.05e-01 87.8% 49.3%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 48.0 3.19e-01 94.6% 33.1%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 43.0 4.25e-01 82.4% 97.5%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.57 47.0 3.64e-01 91.9% 55.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.25e-01 86.5% 84.6%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 49.0 3.96e-01 95.9% 77.3%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.56 41.0 3.59e-01 81.1% 95.8%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 43.0 3.15e-01 86.5% 91.8%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 40.0 3.53e-01 78.4% 83.6%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.54 36.0 3.61e-01 81.1% 65.4%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 37.0 3.39e-01 71.6% 98.0%
1wbaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 41.0 3.12e-01 81.1% 91.8%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 47.0 4.05e-01 95.9% 96.5%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 4.16e-01 85.1% 93.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.13e-01 85.1% 92.1%
4u3vA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 42.0 2.93e-01 85.1% 77.3%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.53 45.0 3.79e-01 95.9% 77.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.22e-01 91.9% 85.3%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.52 44.0 4.14e-01 98.6% 89.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 4.00e-01 87.8% 86.4%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 42.0 3.87e-01 91.9% 92.2%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 39.0 2.65e-01 83.8% 21.9%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 3.32e-01 89.2% 74.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3637283 5.1.4.441 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin-link 0.71 59.0 3.75e-01 90.5% 33.5%
4942581 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 59.0 3.73e-01 91.9% 31.7%
3643793 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.70 56.0 3.55e-01 87.8% 35.6%
3370941 295.1.1.35 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FBA_1 0.70 50.0 3.90e-01 77.0% 58.8%
3915503 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 60.0 3.87e-01 94.6% 32.7%
3611332 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 51.0 3.11e-01 78.4% 22.3%
3793643 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 54.0 3.31e-01 89.2% 49.9%
3575714 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.67 57.0 3.57e-01 93.2% 34.2%
3628642 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 57.0 3.62e-01 93.2% 35.9%
3273263 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.67 52.0 3.25e-01 85.1% 21.7%
3797604 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 54.0 3.48e-01 89.2% 45.1%
3299594 5.1.5.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.66 56.0 4.29e-01 94.6% 65.1%
3626243 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.66 51.0 3.19e-01 82.4% 33.2%
3631256 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.66 53.0 3.40e-01 89.2% 39.5%
4001973 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 51.0 4.26e-01 85.1% 64.6%
3174353 5.1.4.573 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30151 0.65 52.0 3.29e-01 87.8% 38.2%
3412934 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.65 50.0 3.18e-01 82.4% 25.1%
3652003 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 49.0 3.23e-01 82.4% 87.6%
3780836 5.1.4.257 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP, FG-GAP_3 0.65 54.0 3.42e-01 94.6% 35.1%
3932732 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.64 51.0 3.32e-01 87.8% 31.9%
3665166 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 53.0 3.43e-01 89.2% 42.9%
3892544 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.64 49.0 3.23e-01 89.2% 20.0%
5021851 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.64 49.0 3.14e-01 82.4% 18.8%
1095153 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 53.0 3.33e-01 91.9% 25.5%
3811228 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.63 53.0 3.55e-01 93.2% 50.3%
3324058 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 52.0 3.41e-01 95.9% 44.5%
3869486 5.1.4.13 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.63 51.0 3.33e-01 94.6% 34.4%
3261845 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 51.0 3.34e-01 93.2% 32.1%
3407007 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 51.0 3.92e-01 90.5% 81.8%
3933012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 54.0 3.26e-01 100.0% 21.9%
4195924 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.61 51.0 3.22e-01 93.2% 40.5%
3438347 5.1.5.63 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.61 47.0 3.86e-01 83.8% 85.0%
3904009 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 47.0 3.09e-01 89.2% 40.3%
3444657 5.1.5.98 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › b-prop_At3g26010-like 0.59 48.0 3.24e-01 90.5% 35.1%
3575356 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.24e-01 94.6% 42.8%
222972 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 43.0 4.10e-01 82.4% 86.5%
3873966 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.57 50.0 3.26e-01 100.0% 25.6%
3711018 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 49.0 3.17e-01 100.0% 36.9%
4888996 5.1.5.77 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR75_1st 0.57 48.0 3.18e-01 95.9% 29.8%
3723546 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 49.0 3.23e-01 98.6% 32.8%
3740661 5.1.4.119 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.56 48.0 3.08e-01 100.0% 34.0%
3321190 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 48.0 3.18e-01 97.3% 36.4%
3725709 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.89e-01 86.5% 75.5%
4153442 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 45.0 3.91e-01 93.2% 81.7%
3670182 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.54 42.0 3.60e-01 85.1% 52.0%
3904071 214.1.1.11 a+b two layers › SH2 › SH2 › SH2 › PF27628 0.54 45.0 3.89e-01 93.2% 60.8%
3702931 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.54 41.0 3.14e-01 85.1% 36.9%
4216680 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 44.0 4.20e-01 95.9% 89.2%
3907198 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.52 41.0 3.07e-01 86.5% 83.9%
4175367 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 43.0 4.16e-01 97.3% 94.4%
3934802 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.52 43.0 4.02e-01 94.6% 81.1%
4638787 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 43.0 4.24e-01 98.6% 98.8%
140148 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 43.0 3.46e-01 95.9% 56.1%
4135153 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 43.0 4.30e-01 97.3% 98.7%
3494020 109.4.1.882 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UBC_like 0.51 41.0 2.32e-01 93.2% 7.6%
5023443 330.4.1.0 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.51 40.0 4.16e-01 91.9% 100.0%
3498091 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.51 42.0 3.67e-01 100.0% 89.2%
3784543 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.50 42.0 4.05e-01 94.6% 100.0%
4040973 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.50 40.0 4.15e-01 94.6% 100.0%