Back to structures

IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074923

Arc-Vir

IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074923

Quality

90.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-33_119-155
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 45.0 4.02e-01 74.2% 88.8%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 51.0 4.03e-01 86.4% 47.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.62 42.0 4.30e-01 72.7% 75.8%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 39.0 3.53e-01 74.2% 45.3%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 3.82e-01 72.7% 54.9%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 48.0 4.02e-01 92.4% 56.7%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 51.0 5.00e-01 98.5% 90.1%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.59 47.0 3.87e-01 87.9% 82.8%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 45.0 3.78e-01 87.9% 79.5%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 47.0 4.57e-01 100.0% 88.5%
5xweA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 38.0 4.10e-01 95.5% 94.1%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.56 46.0 4.09e-01 90.9% 81.1%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.55 42.0 4.06e-01 84.8% 83.3%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 44.0 4.47e-01 97.0% 95.2%
3cwzB03 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.54 35.0 2.98e-01 74.2% 37.2%
1cb9A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 40.0 4.19e-01 97.0% 96.7%
1kjqB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 37.0 2.76e-01 77.3% 87.6%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 42.0 3.84e-01 92.4% 89.4%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 38.0 3.99e-01 100.0% 94.8%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.69e-01 92.4% 78.6%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 42.0 3.73e-01 92.4% 85.6%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.51 36.0 2.80e-01 74.2% 77.5%
2ba1D01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.50 39.0 2.83e-01 90.9% 91.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995672 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 46.0 5.02e-01 74.2% 96.0%
3671921 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 45.0 4.89e-01 83.3% 89.1%
146929 3115.3.1.1 a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.62 45.0 4.81e-01 98.5% 94.6%
3412052 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 41.0 4.23e-01 74.2% 75.0%
4027344 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 42.0 3.48e-01 72.7% 48.3%
3911204 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.61 51.0 4.98e-01 100.0% 93.3%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 42.0 4.48e-01 72.7% 100.0%
169110 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.60 51.0 5.02e-01 98.5% 91.4%
3897315 382.1.1.2 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.59 50.0 4.74e-01 98.5% 90.0%
3672250 207.1.1.116 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.58 47.0 3.43e-01 90.9% 35.8%
3746678 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.58 48.0 4.67e-01 98.5% 92.0%
3554291 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.57 47.0 4.52e-01 100.0% 83.1%
8275 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.57 47.0 4.46e-01 100.0% 90.5%
4973639 210.2.1.3 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.56 44.0 3.40e-01 92.4% 80.5%
4259426 329.1.1.1 a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.55 41.0 3.30e-01 80.3% 91.1%
3630093 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 47.0 4.61e-01 100.0% 98.7%
3714622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 41.0 3.50e-01 83.3% 55.0%
3393677 382.1.1.14 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 0.55 47.0 4.47e-01 98.5% 91.3%
3958897 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.55 46.0 3.87e-01 97.0% 88.3%
3933905 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.55 42.0 3.40e-01 86.4% 45.7%
3936539 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.44e-01 72.7% 53.3%
5039001 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.26e-01 72.7% 47.0%
3577827 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 45.0 4.35e-01 98.5% 93.3%
3390573 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.51 36.0 3.71e-01 74.2% 86.4%
3898397 11.2.1.24 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › SPATA6 0.51 43.0 3.38e-01 100.0% 99.4%
3242738 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 41.0 4.01e-01 98.5% 90.7%
D2 high residues 45-116
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.76 34.0 3.37e-01 100.0% 39.7%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 39.0 3.48e-01 98.6% 43.4%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.62 43.0 3.68e-01 90.3% 43.7%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.56 42.0 3.31e-01 80.6% 100.0%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 40.0 2.69e-01 79.2% 87.0%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 40.0 3.61e-01 86.1% 57.8%
2ebzA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.53 40.0 3.92e-01 84.7% 100.0%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 3.66e-01 88.9% 72.2%
2lklA01 1.10.1900.40 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 0.52 32.0 3.22e-01 93.1% 59.7%
1werA01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.51 36.0 2.79e-01 75.0% 97.2%
2cfoA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.51 28.0 3.18e-01 81.9% 72.2%
7e4mA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 36.0 2.55e-01 77.8% 21.1%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 43.0 3.96e-01 94.4% 79.8%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 41.0 3.14e-01 93.1% 85.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050323 3962.1.1.0 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.67 41.0 3.19e-01 98.6% 30.3%
2749857 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.63 35.0 2.30e-01 94.4% 13.4%
4520394 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.60 44.0 4.52e-01 100.0% 79.7%
3733292 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.60 41.0 2.99e-01 94.4% 24.9%
4251290 101.1.2.573 alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel 0.59 41.0 3.64e-01 70.8% 87.0%
5070405 109.4.1.363 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcf25 0.59 41.0 2.73e-01 72.2% 51.2%
3724035 281.1.1.1 a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.58 51.0 3.46e-01 100.0% 72.0%
3494812 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 48.0 3.39e-01 100.0% 47.5%
3962717 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 38.0 2.93e-01 70.8% 71.2%
3380341 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 35.0 3.54e-01 90.3% 65.7%
3615393 632.6.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.55 37.0 3.47e-01 88.9% 54.7%
3537779 192.29.1.19 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Cornichon 0.54 44.0 3.48e-01 93.1% 41.2%
4992540 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 36.0 3.72e-01 83.3% 71.4%
3768303 3736.1.1.1 alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4_HD2 0.53 38.0 3.02e-01 77.8% 37.6%
3200876 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.53 48.0 4.43e-01 97.2% 87.8%
3534897 109.4.1.1715 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TANGO6 0.53 37.0 2.61e-01 75.0% 23.3%
3537672 5050.1.1.2 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.53 43.0 3.01e-01 93.1% 58.5%
3579266 5055.1.1.11 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › Cation_ATPase_N 0.53 38.0 3.76e-01 88.9% 73.3%
4490974 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.52 41.0 2.89e-01 84.7% 52.4%
4176207 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.01e-01 77.8% 56.7%
4978215 3896.1.2.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase 0.52 47.0 3.56e-01 100.0% 75.2%
4008328 5086.1.1.219 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF30251 0.52 37.0 2.89e-01 75.0% 87.5%
5014643 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.52 45.0 3.18e-01 100.0% 56.8%
3399005 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.51 41.0 3.87e-01 88.9% 73.3%
3682039 604.1.1.188 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mito_carr 0.51 33.0 2.90e-01 90.3% 43.6%
3884291 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.50 42.0 2.84e-01 93.1% 24.9%
3600712 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.50 42.0 4.02e-01 93.1% 82.4%
4479545 3843.1.1.1 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.50 41.0 3.78e-01 93.1% 82.7%
3279916 633.21.1.34 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF7144 0.50 44.0 3.80e-01 98.6% 96.5%
4019686 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.50 40.0 2.65e-01 88.9% 21.3%
4306590 109.40.1.1 alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Hira 0.50 36.0 2.85e-01 76.4% 57.4%