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IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074925

Arc-Vir

IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074925

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dynA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 67.0 5.23e-01 100.0% 50.4%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 62.0 4.88e-01 96.4% 47.5%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 62.0 4.88e-01 96.4% 54.8%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 59.0 4.60e-01 96.4% 50.0%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 53.0 4.60e-01 91.1% 96.6%
2w40A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 54.0 3.64e-01 100.0% 60.3%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.65 45.0 3.76e-01 92.9% 40.8%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 53.0 4.28e-01 96.4% 49.6%
2g5fB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.63 53.0 3.20e-01 100.0% 34.4%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 50.0 3.48e-01 92.9% 77.9%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 45.0 4.23e-01 78.6% 94.2%
2v4jB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.61 52.0 3.68e-01 98.2% 40.4%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 51.0 3.87e-01 92.9% 51.1%
1dzaA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.61 46.0 3.54e-01 80.4% 70.0%
1zyiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.13e-01 96.4% 60.3%
4e4tA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 47.0 3.43e-01 96.4% 83.7%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 47.0 3.36e-01 92.9% 81.4%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 50.0 3.66e-01 96.4% 39.6%
1b1eA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.60 47.0 3.63e-01 85.7% 67.5%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 46.0 3.78e-01 94.6% 77.1%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.58 46.0 3.87e-01 96.4% 94.6%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 44.0 3.55e-01 87.5% 89.7%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.66e-01 96.4% 47.6%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 37.0 3.61e-01 78.6% 60.0%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.56 44.0 3.59e-01 94.6% 96.7%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 4.11e-01 98.2% 72.1%
2i9dA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 44.0 3.16e-01 100.0% 28.6%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 3.39e-01 82.1% 95.3%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.54 44.0 3.42e-01 100.0% 69.9%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.53 39.0 2.71e-01 94.6% 20.9%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 2.78e-01 73.2% 31.5%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 3.58e-01 82.1% 69.6%
4bwiB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 43.0 3.09e-01 96.4% 49.7%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 38.0 3.34e-01 85.7% 95.1%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 3.08e-01 96.4% 31.9%
1k0rA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.51 35.0 3.06e-01 75.0% 43.4%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 37.0 3.66e-01 87.5% 75.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3996623 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 64.0 5.45e-01 94.6% 61.1%
4003604 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 64.0 5.16e-01 96.4% 57.1%
4029815 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 60.0 4.59e-01 96.4% 39.2%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 58.0 4.30e-01 100.0% 33.8%
3614586 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.72 60.0 4.73e-01 94.6% 45.8%
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.71 62.0 5.11e-01 98.2% 67.0%
4030439 7552.1.1.1 a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.68 56.0 3.32e-01 98.2% 58.2%
3588192 4325.1.1.7 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.67 51.0 5.29e-01 89.3% 96.0%
3489252 7033.1.1.0 a+b complex topology › Ribonuclease P protein subunit p40 › Ribonuclease P protein subunit p40 › Ribonuclease P protein subunit p40 0.66 49.0 3.10e-01 82.1% 93.9%
4030631 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.65 54.0 3.76e-01 96.4% 43.9%
3761877 391.1.2.13 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1-VW_OTOGL 0.65 46.0 3.27e-01 75.0% 32.4%
3495452 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.65 53.0 3.45e-01 100.0% 18.6%
3705943 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 49.0 4.01e-01 87.5% 44.8%
3515384 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.64 45.0 3.38e-01 76.8% 86.7%
3587376 386.1.1.344 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Arm-DNA-bind_4 0.63 52.0 5.28e-01 94.6% 96.4%
3728770 220.1.1.201 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.62 52.0 4.27e-01 98.2% 50.9%
3388650 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 47.0 4.38e-01 82.1% 65.7%
3270895 304.107.1.5 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.62 44.0 3.59e-01 78.6% 96.5%
5018419 2484.1.1.139 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.61 51.0 3.47e-01 100.0% 24.3%
3510878 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.61 49.0 4.05e-01 98.2% 84.2%
4024738 220.1.1.243 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30062 0.61 51.0 4.27e-01 98.2% 57.1%
5075465 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.61 47.0 4.68e-01 96.4% 81.7%
3244569 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 47.0 4.14e-01 85.7% 58.8%
3785844 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.60 48.0 3.50e-01 94.6% 57.5%
3929989 330.16.1.2 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › KAP 0.60 48.0 4.26e-01 91.1% 74.1%
3738542 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 51.0 3.02e-01 96.4% 72.8%
3515319 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 43.0 4.00e-01 80.4% 98.7%
3727046 247.1.1.9 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL 0.59 49.0 3.11e-01 92.9% 91.4%
3272573 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 48.0 4.51e-01 100.0% 76.0%
3614143 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.58 46.0 3.61e-01 87.5% 41.9%
3173047 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.58 46.0 2.93e-01 92.9% 89.7%
3597221 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 52.0 4.40e-01 100.0% 64.4%
4935472 330.4.1.0 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.57 48.0 4.55e-01 96.4% 80.0%
3317394 304.48.1.21 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C 0.57 50.0 3.26e-01 100.0% 49.6%
3508084 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 44.0 4.04e-01 94.6% 64.7%
4932126 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.56 43.0 3.31e-01 87.5% 86.2%
4214888 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.56 44.0 3.66e-01 87.5% 57.0%
5036880 330.1.1.35 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.55 43.0 4.00e-01 87.5% 67.1%
3173646 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 46.0 3.33e-01 94.6% 58.8%
3608102 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 45.0 4.22e-01 92.9% 78.6%
3937984 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 42.0 3.50e-01 87.5% 47.0%
3931594 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 42.0 3.58e-01 87.5% 52.2%
4999001 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.54 44.0 2.85e-01 92.9% 49.6%
3704313 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.54 41.0 3.25e-01 85.7% 92.0%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 41.0 4.18e-01 96.4% 92.7%
4927503 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.53 40.0 3.16e-01 89.3% 87.1%
4609498 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 44.0 3.94e-01 94.6% 70.0%
1442666 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.53 39.0 3.55e-01 82.1% 67.9%
3258455 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 42.0 3.54e-01 96.4% 67.9%
4560015 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.53 39.0 3.55e-01 78.6% 88.0%
4106796 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.53 37.0 3.67e-01 80.4% 70.0%
2772512 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 39.0 2.88e-01 78.6% 77.9%
4020093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.29e-01 96.4% 82.2%
3928293 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 40.0 3.19e-01 85.7% 40.9%
None 0.51 42.0 2.74e-01 100.0% 53.8%
4250601 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.51 43.0 3.09e-01 96.4% 31.8%
3820181 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.51 40.0 3.20e-01 96.4% 71.9%
4012005 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 41.0 2.50e-01 91.1% 13.5%
None 0.50 42.0 2.44e-01 100.0% 25.3%
3652999 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.50 42.0 3.58e-01 98.2% 99.0%
3508694 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.50 34.0 2.43e-01 71.4% 63.5%
4927548 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.50 42.0 3.34e-01 94.6% 82.5%
4963179 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 39.0 3.16e-01 89.3% 58.3%