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IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_100007493

Arc-Vir

IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_100007493

Quality

87.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-74_136-163
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 34.0 3.72e-01 88.7% 74.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390253 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 34.0 3.43e-01 87.3% 68.0%
D2 medium residues 75-135
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 55.0 3.90e-01 98.4% 70.8%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 51.0 3.78e-01 98.4% 76.4%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.27e-01 91.8% 88.4%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 49.0 4.04e-01 100.0% 82.3%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.59 50.0 3.96e-01 98.4% 70.5%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.43e-01 100.0% 67.4%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.58 39.0 3.24e-01 70.5% 46.2%
2gwcA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.57 45.0 2.67e-01 85.2% 46.6%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.60e-01 80.3% 52.0%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 3.79e-01 75.4% 70.0%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.55 45.0 3.66e-01 95.1% 90.5%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 40.0 3.34e-01 82.0% 44.2%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 37.0 3.45e-01 73.8% 84.0%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.54 44.0 4.44e-01 98.4% 98.4%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 42.0 3.79e-01 100.0% 62.0%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.65e-01 70.5% 100.0%
4asmB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 2.81e-01 95.1% 37.5%
3rbtD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 40.0 3.21e-01 83.6% 75.2%
5yxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.70e-01 98.4% 62.7%
1cduA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.61e-01 93.4% 66.3%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 2.79e-01 100.0% 93.6%
7ffnN01 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.51 43.0 3.17e-01 98.4% 94.5%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 3.58e-01 86.9% 88.1%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.35e-01 93.4% 58.7%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.50 34.0 3.13e-01 72.1% 68.2%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.48e-01 100.0% 56.2%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.45e-01 98.4% 55.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051960 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.19e-01 100.0% 68.4%
2712015 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.62 49.0 4.58e-01 90.2% 93.8%
139131 223.1.1.51 a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.62 55.0 3.91e-01 98.4% 71.2%
4441925 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 43.0 3.24e-01 73.8% 53.8%
4950368 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 52.0 3.98e-01 100.0% 82.6%
3619334 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 4.40e-01 93.4% 91.1%
4930436 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.59 47.0 3.96e-01 93.4% 89.6%
3595430 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 50.0 3.56e-01 100.0% 70.5%
3863197 77.1.1.2 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.58 47.0 3.59e-01 93.4% 67.5%
3680084 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.58 48.0 4.53e-01 96.7% 77.3%
3192398 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 44.0 2.62e-01 86.9% 48.7%
3623715 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 38.0 3.79e-01 100.0% 66.2%
4947372 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 3.97e-01 98.4% 70.9%
3894618 223.1.1.78 a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC 0.55 47.0 3.27e-01 96.7% 78.1%
3197429 244.2.1.10 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.54 40.0 2.62e-01 82.0% 67.4%
3790425 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 41.0 3.21e-01 98.4% 60.0%
D3 medium residues 164-224
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.63 44.0 2.72e-01 75.4% 35.4%
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.61 46.0 3.02e-01 85.2% 33.2%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 44.0 3.71e-01 78.7% 60.0%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 43.0 3.47e-01 82.0% 77.4%
4f0aB02 3.30.2460.20 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain 0.58 40.0 3.94e-01 73.8% 92.6%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.98e-01 95.1% 80.8%
1vq8D00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 37.0 2.93e-01 80.3% 30.7%
7by6B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 40.0 2.75e-01 80.3% 54.5%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.54 37.0 2.67e-01 75.4% 22.8%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.58e-01 85.2% 78.2%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 39.0 3.40e-01 78.7% 60.8%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.44e-01 85.2% 73.8%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 42.0 3.77e-01 90.2% 95.6%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 39.0 2.97e-01 82.0% 79.5%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 2.81e-01 88.5% 71.2%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 39.0 3.16e-01 83.6% 66.4%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.53 40.0 2.83e-01 88.5% 78.2%
1j5wB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 38.0 2.77e-01 80.3% 66.7%
2ougA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.52 39.0 3.12e-01 90.2% 36.9%
1cfyA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 44.0 3.53e-01 100.0% 91.7%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.52 38.0 3.08e-01 80.3% 82.1%
1wq8A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 36.0 3.11e-01 75.4% 64.6%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 37.0 2.62e-01 90.2% 22.6%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 38.0 2.98e-01 85.2% 34.0%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 36.0 3.29e-01 85.2% 53.2%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 36.0 3.24e-01 80.3% 54.3%
1l9aA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.50 32.0 2.91e-01 77.0% 43.7%
1fi8C00 2.60.40.550 Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin 0.50 33.0 3.15e-01 91.8% 53.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404903 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.66 49.0 3.44e-01 80.3% 76.4%
3226927 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.65 49.0 3.20e-01 86.9% 35.6%
3740450 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.63 46.0 4.06e-01 77.0% 58.9%
5053066 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.63 45.0 3.07e-01 77.0% 22.6%
3291254 2004.1.1.286 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TraG-D_C 0.62 45.0 2.63e-01 78.7% 11.7%
3592296 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 44.0 3.65e-01 78.7% 40.8%
3733648 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 3.30e-01 83.6% 36.9%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.59 43.0 2.79e-01 80.3% 56.6%
3663237 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 40.0 3.70e-01 72.1% 58.7%
4989866 205.1.1.17 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.58 45.0 3.15e-01 86.9% 55.0%
3555682 109.4.1.1397 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PF29376 0.58 42.0 2.44e-01 80.3% 9.6%
4989897 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.58 41.0 3.00e-01 78.7% 70.0%
4899007 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.57 37.0 3.54e-01 77.0% 55.6%
3622254 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 3.56e-01 86.9% 90.4%
3255418 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.57 45.0 2.78e-01 88.5% 15.6%
3744607 298.1.1.6 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C 0.57 41.0 2.72e-01 80.3% 30.2%
3997943 109.4.1.1580 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.57 40.0 2.34e-01 78.7% 10.3%
4856794 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.56 36.0 3.37e-01 72.1% 51.9%
3235148 221.1.1.58 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CRIM 0.55 39.0 3.28e-01 75.4% 86.4%
3661686 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.55 39.0 3.33e-01 77.0% 44.8%
4979109 2006.1.4.56 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF5615 0.54 39.0 3.29e-01 82.0% 73.9%
3959362 101.1.1.531 alpha arrays › HTH › HTH › Three-helical HTH › WS_DGAT_cat 0.54 39.0 2.97e-01 78.7% 69.3%
3721821 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 38.0 2.53e-01 78.7% 86.1%
5004937 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.53 38.0 2.55e-01 77.0% 22.5%
5033908 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.52 42.0 3.01e-01 93.4% 56.6%
3380640 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 37.0 2.60e-01 80.3% 33.6%
4797685 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.52 38.0 3.21e-01 82.0% 61.9%
3895480 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.52 37.0 2.94e-01 80.3% 78.6%
3165049 3218.1.1.0 a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain 0.52 35.0 3.47e-01 70.5% 73.8%
3593756 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 36.0 2.96e-01 75.4% 62.5%
4014355 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 40.0 3.66e-01 90.2% 67.1%