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IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074932
Arc-VirIMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074932
Identity
- Kingdom:
- archaea
Quality
75.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-97
Domain cluster:
rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 68.0 | 5.01e-01 | 100.0% | 41.2% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 68.0 | 4.96e-01 | 100.0% | 40.2% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.74 | 67.0 | 4.96e-01 | 100.0% | 40.8% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.74 | 67.0 | 4.88e-01 | 100.0% | 41.6% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 67.0 | 6.09e-01 | 100.0% | 79.7% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.74 | 66.0 | 5.04e-01 | 100.0% | 43.4% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 66.0 | 5.94e-01 | 100.0% | 83.2% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 65.0 | 4.78e-01 | 100.0% | 40.4% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.72 | 65.0 | 4.85e-01 | 100.0% | 40.8% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.72 | 65.0 | 5.12e-01 | 100.0% | 49.7% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.72 | 64.0 | 4.81e-01 | 100.0% | 41.7% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.70 | 63.0 | 5.04e-01 | 100.0% | 49.7% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.70 | 62.0 | 5.63e-01 | 100.0% | 74.6% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.69 | 62.0 | 5.74e-01 | 100.0% | 82.1% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.69 | 63.0 | 5.82e-01 | 100.0% | 83.3% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.69 | 62.0 | 5.03e-01 | 100.0% | 60.0% |
| 3kihC01 | 2.20.25.510 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 24.0 | 3.57e-01 | 83.3% | 100.0% |
| 1xexB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 29.0 | 2.46e-01 | 87.5% | 28.0% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 30.0 | 3.54e-01 | 88.5% | 76.2% |
| 1uc8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 35.0 | 3.53e-01 | 100.0% | 62.8% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.53 | 40.0 | 3.48e-01 | 80.2% | 53.9% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.52 | 27.0 | 3.31e-01 | 80.2% | 82.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3719897 | 227.1.1.18 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C | 0.77 | 70.0 | 6.37e-01 | 100.0% | 80.0% |
| 4146527 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.77 | 70.0 | 6.29e-01 | 100.0% | 80.8% |
| 4372908 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.76 | 67.0 | 6.18e-01 | 100.0% | 75.2% |
| 3963789 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.76 | 69.0 | 6.40e-01 | 100.0% | 85.0% |
| 5039219 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 67.0 | 6.18e-01 | 100.0% | 80.0% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.74 | 68.0 | 6.22e-01 | 100.0% | 83.1% |
| 3936915 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 67.0 | 6.08e-01 | 100.0% | 82.3% |
| 3407531 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.74 | 66.0 | 5.94e-01 | 100.0% | 74.8% |
| 5978 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.74 | 67.0 | 6.19e-01 | 100.0% | 82.9% |
| 1013950 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.74 | 67.0 | 6.16e-01 | 100.0% | 83.6% |
| 4460660 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.74 | 67.0 | 5.94e-01 | 100.0% | 80.7% |
| 3613685 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.73 | 66.0 | 5.83e-01 | 100.0% | 81.4% |
| 4050655 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.73 | 66.0 | 5.99e-01 | 100.0% | 78.5% |
| 3015240 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.73 | 66.0 | 6.12e-01 | 100.0% | 82.8% |
| 4194202 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.73 | 66.0 | 6.03e-01 | 100.0% | 81.6% |
| 3230926 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.72 | 65.0 | 5.90e-01 | 100.0% | 77.7% |
| 3210421 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.72 | 65.0 | 5.54e-01 | 100.0% | 79.4% |
| 3291440 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 59.0 | 5.70e-01 | 100.0% | 79.1% |
| 2878142 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.72 | 65.0 | 5.98e-01 | 100.0% | 82.9% |
| 3022412 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.71 | 63.0 | 5.59e-01 | 100.0% | 77.5% |
| 3223650 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.71 | 63.0 | 5.53e-01 | 100.0% | 79.3% |
| 159555 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.71 | 63.0 | 5.78e-01 | 100.0% | 81.1% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.70 | 64.0 | 5.87e-01 | 100.0% | 78.9% |
| 4463778 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.70 | 63.0 | 5.90e-01 | 100.0% | 84.2% |
| 3387600 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.70 | 64.0 | 5.92e-01 | 100.0% | 83.3% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.70 | 63.0 | 5.83e-01 | 100.0% | 84.2% |
| 4860663 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.70 | 62.0 | 5.51e-01 | 100.0% | 72.1% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.69 | 63.0 | 5.82e-01 | 100.0% | 83.3% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.69 | 62.0 | 5.80e-01 | 100.0% | 82.6% |
| 4047098 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.69 | 62.0 | 5.76e-01 | 100.0% | 85.8% |
| 3388280 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.64 | 56.0 | 5.28e-01 | 100.0% | 80.8% |
| 4998245 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.54 | 43.0 | 3.69e-01 | 87.5% | 98.7% |
| 4128954 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.53 | 35.0 | 3.94e-01 | 96.9% | 92.9% |
| 5066212 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 35.0 | 3.35e-01 | 99.0% | 60.0% |
| 3616294 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 38.0 | 3.45e-01 | 77.1% | 72.8% |