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IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074949

Arc-Vir

IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074949

Identity

Kingdom:
archaea

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 41.0 3.79e-01 94.7% 53.9%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.58 37.0 3.80e-01 100.0% 67.3%
3h95A02 4.10.80.100 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.58 31.0 3.94e-01 91.2% 96.7%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 40.0 2.56e-01 75.4% 41.9%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.57 40.0 2.39e-01 75.4% 60.6%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 43.0 3.20e-01 94.7% 57.4%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.54 34.0 3.58e-01 93.0% 74.0%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 37.0 2.85e-01 73.7% 92.1%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.52 42.0 3.26e-01 93.0% 78.5%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.55e-01 87.7% 64.5%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 43.0 3.39e-01 100.0% 86.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 43.0 3.21e-01 100.0% 97.0%
1cnzA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 43.0 2.70e-01 96.5% 96.1%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 46.0 2.84e-01 100.0% 93.7%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.51 40.0 3.59e-01 100.0% 61.5%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 32.0 3.42e-01 93.0% 92.3%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 40.0 2.64e-01 91.2% 90.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946062 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 64.0 6.82e-01 77.2% 90.0%
3929515 382.1.1.21 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF28966 0.61 46.0 3.88e-01 86.0% 81.9%
3482807 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.57 48.0 4.02e-01 100.0% 76.9%
3259162 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.57 39.0 3.16e-01 73.7% 34.4%
5077058 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.56 42.0 3.30e-01 82.5% 97.6%
3679515 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 38.0 4.08e-01 94.7% 91.1%
5075279 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.11e-01 100.0% 36.5%
3586391 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.55 45.0 2.93e-01 98.2% 22.3%
3505338 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 46.0 4.19e-01 100.0% 98.8%
3252925 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 46.0 4.11e-01 100.0% 97.6%
5052130 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.53 39.0 2.40e-01 80.7% 27.6%
3880336 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 42.0 2.73e-01 91.2% 90.8%
3850966 3346.1.1.1 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N 0.51 41.0 2.74e-01 91.2% 80.8%
3994884 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 43.0 2.76e-01 96.5% 84.8%
3182828 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 44.0 3.40e-01 100.0% 80.0%
4946532 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 41.0 3.80e-01 98.2% 100.0%
3586911 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 40.0 3.47e-01 91.2% 69.5%
3793671 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.50 44.0 3.88e-01 100.0% 97.6%
5014684 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.50 33.0 3.38e-01 94.7% 67.2%