←Back to structures
IMGVR_UViG_3300022661_003602-3300022661-Ga0216339_100334503
Arc-VirIMGVR_UViG_3300022661_003602-3300022661-Ga0216339_100334503
Identity
- Kingdom:
- archaea
Quality
89.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-114
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p2fA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 54.0 | 5.79e-01 | 94.5% | 91.6% |
| 4b09B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 54.0 | 5.76e-01 | 98.2% | 91.8% |
| 5dcmB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 6.07e-01 | 96.4% | 99.0% |
| 1ev7B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 52.0 | 5.03e-01 | 99.1% | 71.0% |
| 2ff4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 5.72e-01 | 95.5% | 92.9% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 44.0 | 4.48e-01 | 70.9% | 69.5% |
| 2pmuC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 5.70e-01 | 95.5% | 98.9% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 5.05e-01 | 92.7% | 83.7% |
| 1zelA01 | 3.90.56.20 | Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain | 0.66 | 44.0 | 4.62e-01 | 84.5% | 75.5% |
| 2mlkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 5.26e-01 | 98.2% | 90.9% |
| 2k4jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 4.76e-01 | 96.4% | 92.4% |
| 3e3rB01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 34.0 | 3.80e-01 | 98.2% | 77.6% |
| 2mhhA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 33.0 | 3.48e-01 | 76.4% | 68.8% |
| 1i51B00 | 3.30.70.1470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like | 0.52 | 33.0 | 3.58e-01 | 73.6% | 76.1% |
| 1jmoA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.52 | 44.0 | 3.57e-01 | 96.4% | 93.8% |
| 1pyoB00 | 3.30.70.1470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like | 0.52 | 33.0 | 3.46e-01 | 73.6% | 71.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4565956 | 101.1.2.644 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29603 | 0.79 | 53.0 | 6.15e-01 | 100.0% | 93.8% |
| 4962229 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.76 | 46.0 | 5.45e-01 | 76.4% | 88.0% |
| 3284793 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.73 | 53.0 | 5.67e-01 | 94.5% | 86.3% |
| 3205136 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.73 | 50.0 | 5.61e-01 | 89.1% | 90.6% |
| 4161299 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.72 | 56.0 | 5.84e-01 | 95.5% | 89.0% |
| 4324596 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.71 | 54.0 | 5.99e-01 | 95.5% | 97.8% |
| 5074872 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 49.0 | 5.42e-01 | 88.2% | 87.8% |
| 3286003 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.70 | 56.0 | 5.88e-01 | 95.5% | 92.0% |
| 3949351 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.70 | 54.0 | 5.85e-01 | 94.5% | 95.7% |
| 3952565 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.69 | 55.0 | 5.79e-01 | 95.5% | 92.0% |
| 3287723 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.69 | 56.0 | 5.88e-01 | 95.5% | 94.0% |
| 3285759 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.69 | 55.0 | 5.82e-01 | 95.5% | 93.0% |
| 3962209 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 53.0 | 5.56e-01 | 95.5% | 89.0% |
| 3289693 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.68 | 54.0 | 5.75e-01 | 93.6% | 94.7% |
| 3280645 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.68 | 55.0 | 5.93e-01 | 96.4% | 97.9% |
| 5075649 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 45.0 | 5.09e-01 | 81.8% | 89.2% |
| 3987653 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.68 | 57.0 | 6.01e-01 | 96.4% | 99.0% |
| 4238800 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.67 | 55.0 | 5.74e-01 | 95.5% | 94.0% |
| 4464727 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.67 | 59.0 | 6.08e-01 | 100.0% | 99.0% |
| 4322737 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.66 | 56.0 | 5.85e-01 | 95.5% | 97.0% |
| 4217499 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.66 | 55.0 | 5.78e-01 | 99.1% | 97.0% |
| 5035685 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.65 | 45.0 | 4.32e-01 | 73.6% | 62.1% |
| 3742892 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.65 | 49.0 | 4.67e-01 | 79.1% | 92.3% |
| 3958963 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 5.51e-01 | 95.5% | 92.4% |
| 3289238 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.64 | 54.0 | 5.60e-01 | 98.2% | 96.2% |
| 3792616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 42.0 | 4.70e-01 | 76.4% | 87.1% |
| 3980467 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.64 | 56.0 | 5.71e-01 | 100.0% | 96.3% |
| 3200378 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 42.0 | 4.43e-01 | 76.4% | 75.0% |
| 4171616 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.63 | 54.0 | 5.59e-01 | 97.3% | 96.2% |
| 3513267 | 101.1.2.509 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25879 | 0.62 | 39.0 | 4.62e-01 | 72.7% | 92.0% |
| 3476729 | 101.1.2.397 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 | 0.62 | 43.0 | 4.80e-01 | 71.8% | 89.8% |
| 3588472 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.62 | 53.0 | 5.37e-01 | 95.5% | 91.8% |
| 2526893 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.60 | 42.0 | 4.16e-01 | 73.6% | 68.1% |
| 3933695 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 41.0 | 4.70e-01 | 72.7% | 100.0% |
| 3946790 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.58 | 54.0 | 5.35e-01 | 100.0% | 95.7% |
| 3410283 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.54 | 45.0 | 4.44e-01 | 90.0% | 88.7% |
| 3879512 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.50 | 31.0 | 3.38e-01 | 77.3% | 74.4% |
D2
medium
residues 143-211
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.76 | 67.0 | 5.15e-01 | 94.2% | 51.4% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.63 | 52.0 | 4.91e-01 | 92.8% | 73.5% |
| 3goxA03 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.63 | 48.0 | 4.55e-01 | 100.0% | 69.1% |
| 1z2qA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 41.0 | 3.89e-01 | 98.6% | 56.0% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.54 | 44.0 | 3.95e-01 | 100.0% | 62.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 119462 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.77 | 66.0 | 5.12e-01 | 92.8% | 47.9% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.75 | 56.0 | 5.66e-01 | 94.2% | 78.6% |
| 4979945 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.75 | 65.0 | 5.24e-01 | 94.2% | 57.6% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.72 | 61.0 | 5.14e-01 | 91.3% | 60.9% |
| 3489023 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 60.0 | 4.91e-01 | 89.9% | 53.3% |
| 3879791 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 60.0 | 4.07e-01 | 89.9% | 27.6% |
| 3286852 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 61.0 | 5.33e-01 | 95.7% | 64.0% |
| 1144783 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.69 | 63.0 | 4.73e-01 | 100.0% | 65.6% |
| 3487873 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 46.0 | 4.90e-01 | 78.3% | 80.0% |
| 3183646 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.68 | 46.0 | 4.38e-01 | 100.0% | 59.0% |
| 4492949 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.67 | 57.0 | 4.94e-01 | 95.7% | 61.0% |
| 3249964 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.67 | 58.0 | 5.55e-01 | 94.2% | 86.3% |
| 4986026 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.66 | 60.0 | 4.36e-01 | 100.0% | 68.1% |
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.65 | 58.0 | 4.78e-01 | 98.6% | 59.8% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.64 | 53.0 | 4.28e-01 | 91.3% | 52.2% |
| 4969429 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.63 | 54.0 | 4.12e-01 | 95.7% | 41.9% |
| 3993648 | 4309.1.1.1 ↗ | a+b complex topology › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP | 0.54 | 38.0 | 3.33e-01 | 73.9% | 77.1% |