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IMGVR_UViG_3300022666_000305-3300022666-Ga0248168_100493419

Arc-Vir

IMGVR_UViG_3300022666_000305-3300022666-Ga0248168_100493419

Identity

Kingdom:
archaea

Quality

77.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 43.0 4.13e-01 100.0% 54.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 48.0 5.31e-01 98.7% 96.6%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.16e-01 100.0% 89.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.97e-01 97.4% 95.0%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.63 53.0 5.07e-01 97.4% 80.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 38.0 4.49e-01 94.9% 100.0%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 41.0 3.96e-01 85.9% 58.9%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.62 38.0 4.31e-01 100.0% 84.5%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 37.0 4.26e-01 98.7% 87.0%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 36.0 3.55e-01 98.7% 54.9%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.59 36.0 3.86e-01 98.7% 71.2%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.47e-01 100.0% 80.3%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 32.0 3.57e-01 97.4% 68.4%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.59 48.0 4.30e-01 94.9% 71.2%
5cdvA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.57 39.0 3.40e-01 71.8% 77.4%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 37.0 3.15e-01 71.8% 68.7%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 44.0 3.60e-01 94.9% 74.5%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.54 39.0 3.57e-01 80.8% 83.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 37.0 3.30e-01 73.1% 80.2%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 36.0 3.33e-01 71.8% 85.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.52 33.0 3.78e-01 96.2% 98.0%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.51 40.0 3.63e-01 89.7% 65.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.80 53.0 5.75e-01 100.0% 81.5%
5032977 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.65e-01 100.0% 78.8%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 44.0 5.06e-01 94.9% 92.7%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.65 41.0 4.43e-01 92.3% 76.9%
3401816 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.64 50.0 3.50e-01 84.6% 44.1%
4280403 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.62 35.0 4.24e-01 94.9% 93.3%
3181191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.18e-01 100.0% 55.7%
5024995 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 37.0 4.36e-01 100.0% 88.7%
5046498 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.61 46.0 3.60e-01 100.0% 37.6%
4941624 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 38.0 4.50e-01 78.2% 100.0%
4939413 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.60 37.0 4.35e-01 96.2% 96.0%
3668713 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.60 48.0 3.49e-01 100.0% 31.4%
1890284 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.59 37.0 4.15e-01 100.0% 84.5%
3296816 4076.3.1.6 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N 0.58 35.0 3.92e-01 98.7% 78.3%
4027440 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 39.0 3.49e-01 71.8% 78.2%
4182070 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.54 38.0 3.22e-01 73.1% 73.8%
5032233 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 4.21e-01 100.0% 77.4%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.74e-01 100.0% 69.4%
4024735 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 36.0 3.76e-01 88.5% 78.6%
5025933 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 46.0 4.31e-01 100.0% 91.6%
4610148 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 42.0 2.71e-01 96.2% 23.5%