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IMGVR_UViG_3300022855_000154-3300022855-Ga0222677_100027637
Arc-VirIMGVR_UViG_3300022855_000154-3300022855-Ga0222677_100027637
Identity
- Kingdom:
- archaea
Quality
85.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 116-218
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xmkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 50.0 | 5.70e-01 | 85.4% | 86.1% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 50.0 | 4.79e-01 | 81.6% | 57.5% |
| 1z7uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 48.0 | 4.69e-01 | 77.7% | 60.0% |
| 6kf9G01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 48.0 | 5.37e-01 | 77.7% | 82.9% |
| 2fswA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 47.0 | 4.76e-01 | 77.7% | 65.7% |
| 1yyvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 48.0 | 4.66e-01 | 80.6% | 61.6% |
| 2fq3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 47.0 | 5.13e-01 | 84.5% | 84.7% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 45.0 | 5.08e-01 | 74.8% | 88.3% |
| 3u1dB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 4.27e-01 | 77.7% | 51.7% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 43.0 | 4.53e-01 | 81.6% | 71.3% |
| 3df8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 41.0 | 4.11e-01 | 80.6% | 62.4% |
| 3l4gC01 | 3.30.1370.240 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.61 | 42.0 | 4.18e-01 | 85.4% | 68.6% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 20.0 | 3.09e-01 | 97.1% | 73.7% |
| 3vwoA02 | 2.10.70.40 | Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase | 0.53 | 25.0 | 3.29e-01 | 95.1% | 86.3% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.50 | 44.0 | 3.74e-01 | 100.0% | 67.4% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4507638 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.77 | 50.0 | 4.23e-01 | 81.6% | 41.2% |
| 3281207 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.77 | 47.0 | 5.04e-01 | 77.7% | 71.1% |
| 3501315 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.76 | 53.0 | 5.45e-01 | 72.8% | 74.0% |
| 3481547 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.76 | 57.0 | 4.99e-01 | 78.6% | 68.7% |
| 3306699 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.76 | 51.0 | 3.36e-01 | 77.7% | 18.3% |
| 5029277 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.75 | 50.0 | 4.97e-01 | 77.7% | 65.7% |
| 5054103 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 47.0 | 5.58e-01 | 77.7% | 92.9% |
| 3227321 | 101.1.2.278 ↗ | alpha arrays › HTH › HTH › winged helix domain › CNDH2_C | 0.75 | 53.0 | 5.16e-01 | 71.8% | 70.0% |
| 4478999 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.75 | 48.0 | 4.00e-01 | 80.6% | 38.7% |
| 4947062 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 50.0 | 5.23e-01 | 76.7% | 74.7% |
| 4994432 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 49.0 | 4.88e-01 | 80.6% | 65.7% |
| 3549847 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.74 | 55.0 | 3.65e-01 | 77.7% | 25.9% |
| 4930596 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.73 | 48.0 | 4.02e-01 | 77.7% | 40.6% |
| 5082704 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.73 | 51.0 | 4.03e-01 | 77.7% | 37.4% |
| 3840298 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.73 | 58.0 | 5.30e-01 | 82.5% | 67.7% |
| 4974744 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.73 | 47.0 | 3.93e-01 | 78.6% | 38.9% |
| 5073217 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 48.0 | 5.37e-01 | 82.5% | 86.3% |
| 5011653 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.73 | 47.0 | 4.65e-01 | 80.6% | 61.8% |
| 4970516 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.72 | 51.0 | 4.56e-01 | 80.6% | 53.6% |
| 4985036 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.72 | 48.0 | 4.03e-01 | 80.6% | 41.2% |
| 3788427 | 101.1.2.207 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH | 0.72 | 52.0 | 5.34e-01 | 75.7% | 82.0% |
| 4943395 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 48.0 | 4.09e-01 | 80.6% | 41.8% |
| 4980261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 51.0 | 5.13e-01 | 80.6% | 72.4% |
| 4561147 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.72 | 48.0 | 4.48e-01 | 80.6% | 55.5% |
| 3268092 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 53.0 | 5.01e-01 | 80.6% | 65.8% |
| 3926827 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.71 | 62.0 | 3.76e-01 | 93.2% | 16.5% |
| 3655782 | 101.1.2.598 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD | 0.71 | 49.0 | 3.46e-01 | 77.7% | 23.6% |
| 4073416 | 101.1.2.278 ↗ | alpha arrays › HTH › HTH › winged helix domain › CNDH2_C | 0.71 | 49.0 | 4.59e-01 | 70.9% | 58.4% |
| 4971999 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 53.0 | 4.93e-01 | 77.7% | 70.4% |
| 4645692 | 101.1.2.372 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_64 | 0.71 | 50.0 | 5.66e-01 | 80.6% | 100.0% |
| 5026539 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 50.0 | 5.32e-01 | 73.8% | 90.0% |
| 4942158 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.70 | 44.0 | 5.32e-01 | 82.5% | 100.0% |
| 4966558 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 47.0 | 5.09e-01 | 77.7% | 82.4% |
| 4952560 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 51.0 | 5.27e-01 | 84.5% | 81.1% |
| 5066463 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.70 | 44.0 | 5.38e-01 | 77.7% | 100.0% |
| 3797519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 60.0 | 3.66e-01 | 93.2% | 16.5% |
| 4954701 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.69 | 51.0 | 5.09e-01 | 84.5% | 74.3% |
| 4954698 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.69 | 50.0 | 5.22e-01 | 84.5% | 81.1% |
| 3238923 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.69 | 59.0 | 3.67e-01 | 93.2% | 17.2% |
| None | — | 0.69 | 48.0 | 4.66e-01 | 71.8% | 65.2% | |
| 3413597 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.68 | 50.0 | 3.42e-01 | 76.7% | 24.9% |
| 4508433 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.68 | 45.0 | 3.02e-01 | 80.6% | 18.2% |
| 3604402 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.68 | 49.0 | 5.12e-01 | 84.5% | 82.1% |
| 3813507 | 101.1.2.278 ↗ | alpha arrays › HTH › HTH › winged helix domain › CNDH2_C | 0.68 | 47.0 | 4.35e-01 | 71.8% | 63.8% |
| 4940742 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.67 | 46.0 | 5.04e-01 | 78.6% | 85.9% |
| 5003912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 52.0 | 4.52e-01 | 83.5% | 73.8% |
| 3580866 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.67 | 58.0 | 5.51e-01 | 93.2% | 89.2% |
| 3364232 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.65 | 44.0 | 4.79e-01 | 80.6% | 84.7% |
| 4997255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 4.56e-01 | 77.7% | 73.0% |
| 3824526 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 46.0 | 4.23e-01 | 80.6% | 57.0% |
| 5052491 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.64 | 49.0 | 3.97e-01 | 80.6% | 47.4% |
| None | — | 0.64 | 43.0 | 2.93e-01 | 80.6% | 19.2% | |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 49.0 | 3.85e-01 | 80.6% | 53.2% |
| 5046136 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 48.0 | 4.37e-01 | 81.6% | 67.1% |
| 5061235 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.63 | 46.0 | 3.52e-01 | 82.5% | 33.8% |
| 4325040 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.63 | 46.0 | 4.29e-01 | 77.7% | 66.2% |
| 3933222 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.62 | 44.0 | 3.89e-01 | 74.8% | 63.2% |
| 3405388 | 101.1.2.664 ↗ | alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC, WH_GTF3C1_N | 0.62 | 49.0 | 3.16e-01 | 82.5% | 56.5% |
| 3503367 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.61 | 41.0 | 4.76e-01 | 70.9% | 100.0% |
| 3589018 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 3.73e-01 | 76.7% | 62.3% |
| 3713489 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 47.0 | 3.87e-01 | 83.5% | 63.7% |
| 3603693 | 101.1.2.145 ↗ | alpha arrays › HTH › HTH › winged helix domain › HHH_4 | 0.60 | 45.0 | 3.87e-01 | 80.6% | 72.4% |
| None | — | 0.57 | 38.0 | 2.62e-01 | 77.7% | 18.2% |
D2
medium
residues 2-111
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.64 | 35.0 | 4.18e-01 | 72.7% | 78.7% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 35.0 | 4.12e-01 | 70.0% | 78.7% |
| 2co8A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.56 | 34.0 | 3.76e-01 | 77.3% | 78.0% |
| 3g3oA00 | 3.20.100.30 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain | 0.51 | 35.0 | 2.66e-01 | 70.0% | 71.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4295625 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.61 | 33.0 | 4.35e-01 | 72.7% | 98.3% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.55 | 33.0 | 4.04e-01 | 71.8% | 100.0% |
| 4584776 | 101.1.15.3 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung | 0.50 | 36.0 | 2.84e-01 | 75.5% | 87.7% |
D3
medium
residues 228-294
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vl6A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 36.0 | 4.10e-01 | 71.6% | 100.0% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 35.0 | 3.08e-01 | 71.6% | 43.9% |
| 1vw4X00 | 2.20.28.120 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 | 0.51 | 35.0 | 3.65e-01 | 76.1% | 76.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027281 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 36.0 | 3.79e-01 | 77.6% | 69.0% |
| 4938218 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 34.0 | 3.85e-01 | 70.1% | 80.0% |
| 4932189 | 4076.2.1.6 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF1922 | 0.54 | 37.0 | 3.65e-01 | 77.6% | 67.1% |
| 4930203 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.51 | 34.0 | 3.71e-01 | 70.1% | 90.9% |
| 1949981 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 35.0 | 3.65e-01 | 76.1% | 76.6% |