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IMGVR_UViG_3300022868_000032-3300022868-Ga0222697_100008415
Arc-VirIMGVR_UViG_3300022868_000032-3300022868-Ga0222697_100008415
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-180
Domain cluster:
rep: Salt_Pond_R1_A_D2_MG_scaffold_27_prodigal-single.1__X__X__00173__D9-109_126-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08740.17 best | BCS1_N | 28.6 | 1.80e-06 | 100.0% | 68.7% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.66 | 39.0 | 4.82e-01 | 100.0% | 97.5% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.62 | 36.0 | 3.27e-01 | 94.8% | 41.1% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.62 | 40.0 | 4.30e-01 | 97.0% | 76.5% |
| 1dt4A00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.61 | 34.0 | 4.37e-01 | 94.8% | 98.6% |
| 4ud8A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.61 | 36.0 | 3.25e-01 | 95.6% | 41.3% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.61 | 36.0 | 4.53e-01 | 96.3% | 98.8% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.61 | 35.0 | 3.63e-01 | 99.3% | 57.3% |
| 4a0tA03 | 2.60.320.30 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › | 0.61 | 33.0 | 3.96e-01 | 94.8% | 78.9% |
| 1tz0B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 35.0 | 4.01e-01 | 97.0% | 79.4% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.59 | 30.0 | 3.81e-01 | 85.9% | 79.8% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 32.0 | 3.96e-01 | 98.5% | 84.5% |
| 3fw9A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 33.0 | 3.04e-01 | 95.6% | 40.2% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 35.0 | 4.06e-01 | 96.3% | 85.1% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 4.19e-01 | 97.8% | 84.0% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.57 | 34.0 | 3.98e-01 | 97.0% | 81.6% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 4.09e-01 | 97.0% | 84.0% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.57 | 33.0 | 3.82e-01 | 97.0% | 79.2% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 4.01e-01 | 97.0% | 82.5% |
| 3ci0I00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.57 | 30.0 | 3.73e-01 | 85.9% | 83.1% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 34.0 | 3.74e-01 | 98.5% | 73.8% |
| 1rjjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 35.0 | 3.85e-01 | 99.3% | 75.7% |
| 3udcA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 35.0 | 4.25e-01 | 99.3% | 98.9% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 4.02e-01 | 97.8% | 86.4% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 30.0 | 3.58e-01 | 97.8% | 83.3% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.86e-01 | 100.0% | 90.5% |
| 4ia5A02 | 3.30.9.80 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.52 | 40.0 | 3.96e-01 | 98.5% | 76.4% |
| 4dkaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 26.0 | 3.21e-01 | 95.6% | 76.7% |
| 1p97A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 39.0 | 4.21e-01 | 91.1% | 96.5% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.51 | 32.0 | 3.11e-01 | 98.5% | 54.6% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 30.0 | 3.45e-01 | 98.5% | 81.4% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3594386 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.84 | 58.0 | 6.84e-01 | 97.8% | 98.9% |
| 3717061 | 304.107.1.5 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N | 0.82 | 63.0 | 6.79e-01 | 100.0% | 92.2% |
| 3744472 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.80 | 59.0 | 4.18e-01 | 98.5% | 28.3% |
| 3270895 | 304.107.1.5 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N | 0.76 | 62.0 | 6.68e-01 | 98.5% | 100.0% |
| None | — | 0.75 | 61.0 | 4.59e-01 | 99.3% | 37.4% | |
| 3808055 | 244.1.1.29 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › AAA_assoc | 0.73 | 61.0 | 6.48e-01 | 100.0% | 100.0% |
| 3809725 | 304.107.1.8 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › AAA_assoc | 0.72 | 64.0 | 6.51e-01 | 99.3% | 96.9% |
| 3370846 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 65.0 | 4.44e-01 | 100.0% | 30.9% |
| 3432828 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 60.0 | 4.33e-01 | 100.0% | 34.3% |
| 3495780 | 304.107.1.5 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N | 0.69 | 62.0 | 5.92e-01 | 100.0% | 83.2% |
| 3998555 | 327.11.2.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_10 | 0.65 | 38.0 | 4.75e-01 | 97.0% | 97.5% |
| None | — | 0.64 | 60.0 | 4.50e-01 | 100.0% | 76.8% | |
| 5051461 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 37.0 | 3.40e-01 | 85.2% | 49.4% |
| 3892186 | 327.11.2.23 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_8 | 0.59 | 37.0 | 4.15e-01 | 100.0% | 83.0% |
| 5053322 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 35.0 | 3.45e-01 | 83.7% | 55.2% |
| 4974181 | 331.3.1.74 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF27226 | 0.58 | 37.0 | 4.22e-01 | 86.7% | 87.9% |
| 3978531 | 223.1.1.58 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N | 0.57 | 36.0 | 3.42e-01 | 85.9% | 54.2% |
| 4541933 | 223.1.1.43 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CusS | 0.57 | 35.0 | 3.30e-01 | 85.9% | 51.9% |
| 4928030 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 34.0 | 3.66e-01 | 84.4% | 69.2% |
| 5050533 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 34.0 | 3.37e-01 | 85.2% | 58.6% |
| 3711910 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 35.0 | 3.30e-01 | 83.7% | 53.8% |
| 3285873 | 223.1.1.36 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD | 0.55 | 44.0 | 4.03e-01 | 85.9% | 86.1% |
| 3289517 | 304.6.1.2 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › ALO | 0.54 | 34.0 | 2.81e-01 | 97.8% | 33.6% |
| 5050618 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 35.0 | 3.53e-01 | 84.4% | 62.9% |
| 5053192 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 36.0 | 3.71e-01 | 85.9% | 68.7% |
| 5049138 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 37.0 | 3.73e-01 | 83.7% | 69.6% |
| 3998298 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 34.0 | 2.98e-01 | 85.9% | 41.0% |
| 4970968 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.54 | 42.0 | 4.52e-01 | 99.3% | 99.1% |
| 5051386 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 35.0 | 3.36e-01 | 83.7% | 56.2% |
| 5074212 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.54 | 41.0 | 4.45e-01 | 96.3% | 99.1% |
| 3929223 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 34.0 | 3.20e-01 | 83.7% | 53.8% |
| 3168866 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.53 | 34.0 | 3.20e-01 | 84.4% | 53.7% |
| 3781073 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.53 | 35.0 | 3.53e-01 | 83.7% | 65.7% |
| 3548894 | 5.1.4.320 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 | 0.53 | 41.0 | 3.00e-01 | 82.2% | 97.3% |
| 3921186 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.52 | 35.0 | 3.69e-01 | 97.8% | 73.6% |
| 3574420 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 33.0 | 3.16e-01 | 83.7% | 54.4% |
| 5049631 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 37.0 | 3.67e-01 | 85.2% | 70.7% |
| 3481772 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.51 | 39.0 | 4.04e-01 | 95.6% | 86.2% |
| 3968207 | 223.1.1.54 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE4 | 0.51 | 37.0 | 3.05e-01 | 85.9% | 41.6% |
| 3986460 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.51 | 36.0 | 3.85e-01 | 84.4% | 83.3% |
| 4997740 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.50 | 39.0 | 3.92e-01 | 97.0% | 79.3% |
| 3942222 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.50 | 36.0 | 3.88e-01 | 83.7% | 87.0% |
| 5051116 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 33.0 | 3.23e-01 | 83.7% | 60.0% |
D2
high
residues 185-359
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05496.19 | RuvB_N | 27.3 | 3.80e-06 | 66.9% | 42.8% |
| PF00004.36 best | AAA | 78.6 | 8.30e-22 | 66.9% | 97.7% |
| PF00910.29 | RNA_helicase | 22.3 | 2.20e-04 | 55.4% | 61.0% |
D3
high
residues 365-413
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.74 | 51.0 | 3.97e-01 | 71.4% | 37.0% |
| 4lc3A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 42.0 | 3.17e-01 | 75.5% | 89.6% |
| 2qkdA04 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.58 | 43.0 | 3.24e-01 | 81.6% | 33.1% |
| 3o7iA00 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.55 | 42.0 | 3.22e-01 | 98.0% | 48.0% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 41.0 | 3.44e-01 | 93.9% | 80.8% |
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 39.0 | 2.55e-01 | 79.6% | 53.9% |
| 1zmoA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 40.0 | 2.78e-01 | 100.0% | 93.4% |
| 1tm9A00 | 1.10.3960.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein MG354 fold › MG354-like | 0.52 | 34.0 | 2.63e-01 | 98.0% | 24.8% |
| 3nzeA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 43.0 | 2.79e-01 | 100.0% | 95.7% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.51 | 41.0 | 2.86e-01 | 100.0% | 42.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3309800 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 50.0 | 4.42e-01 | 87.8% | 61.3% |
| 4013366 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 44.0 | 3.22e-01 | 79.6% | 83.3% |
| 3923627 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.53 | 44.0 | 3.10e-01 | 93.9% | 95.6% |