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IMGVR_UViG_3300022888_000244-3300022888-Ga0233428_10120198

Arc-Vir

IMGVR_UViG_3300022888_000244-3300022888-Ga0233428_10120198

Identity

Kingdom:
archaea

Quality

70.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-39
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.71 54.0 3.28e-01 84.6% 24.2%
5tnvA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 48.0 2.91e-01 84.6% 79.1%
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.61 41.0 2.84e-01 71.8% 58.9%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 42.0 3.28e-01 84.6% 29.7%
1zoyA04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.59 43.0 3.77e-01 84.6% 63.1%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.58 38.0 3.58e-01 100.0% 49.1%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 46.0 3.86e-01 97.4% 89.6%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.57 40.0 3.28e-01 79.5% 42.9%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 47.0 3.80e-01 97.4% 82.9%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 43.0 3.22e-01 92.3% 36.5%
2xauA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 2.90e-01 92.3% 55.2%
1fi8C00 2.60.40.550 Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin 0.54 42.0 3.60e-01 100.0% 71.8%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.75e-01 94.9% 52.4%
7b1cD01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.52 37.0 3.21e-01 100.0% 88.6%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.52 36.0 3.18e-01 97.4% 43.1%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.51 41.0 2.85e-01 100.0% 54.9%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.09e-01 100.0% 57.3%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 40.0 2.75e-01 100.0% 62.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585925 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.74 45.0 2.94e-01 84.6% 14.5%
5031988 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.71 46.0 4.26e-01 97.4% 52.0%
143109 2007.1.1.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase1_like 0.71 54.0 3.28e-01 84.6% 24.2%
4994020 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.70 46.0 4.05e-01 97.4% 44.8%
1765248 604.2.1.0 ↗ alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 0.68 42.0 2.89e-01 89.7% 17.3%
3576744 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.66 44.0 3.80e-01 89.7% 41.5%
4941478 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.65 42.0 3.79e-01 97.4% 47.3%
3483369 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 45.0 2.73e-01 74.4% 43.4%
3273838 2006.1.1.35 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Pex22_HAD-like 0.63 44.0 3.13e-01 74.4% 23.7%
5080671 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.63 41.0 3.53e-01 100.0% 37.1%
3915702 3426.1.1.1 ↗ beta meanders › Telethonin › Telethonin › Telethonin › Telethonin 0.62 43.0 3.37e-01 74.4% 36.7%
3520141 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.60 38.0 3.69e-01 92.3% 51.1%
1948837 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.59 38.0 3.68e-01 100.0% 54.2%
5049822 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 45.0 4.41e-01 100.0% 77.8%
5030944 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.58 38.0 3.66e-01 97.4% 57.8%
3169402 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 37.0 3.32e-01 100.0% 45.0%
3206614 706.1.1.0 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE 0.56 44.0 3.76e-01 97.4% 67.6%
3809675 59.1.3.1 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.56 43.0 3.31e-01 97.4% 42.5%
3931251 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.55 43.0 2.65e-01 100.0% 77.1%
3262894 59.1.3.1 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.54 48.0 3.47e-01 100.0% 76.2%
3392825 59.1.3.0 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.54 47.0 3.48e-01 100.0% 76.0%
3480627 59.1.3.0 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.53 44.0 3.46e-01 92.3% 56.2%
3215298 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 45.0 2.77e-01 100.0% 81.2%
3183994 3385.1.1.2 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › PF27986 0.52 43.0 3.44e-01 97.4% 96.4%
2141918 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 36.0 2.42e-01 71.8% 18.8%
4240625 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.51 40.0 3.07e-01 84.6% 43.3%
3881280 59.1.3.1 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.51 45.0 3.24e-01 100.0% 79.1%
3818549 59.1.1.2 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 0.50 39.0 3.09e-01 100.0% 86.7%
3186226 7527.1.1.1 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.50 40.0 2.42e-01 100.0% 43.7%