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IMGVR_UViG_3300022888_000283-3300022888-Ga0233428_100571511
Arc-VirIMGVR_UViG_3300022888_000283-3300022888-Ga0233428_100571511
Identity
- Kingdom:
- archaea
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-55
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.71 | 37.0 | 3.98e-01 | 96.4% | 59.2% |
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.70 | 58.0 | 4.67e-01 | 98.2% | 93.2% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 39.0 | 3.92e-01 | 83.6% | 56.4% |
| 3sjnA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 48.0 | 3.87e-01 | 92.7% | 48.7% |
| 4dooA02 | 1.10.890.20 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › | 0.59 | 48.0 | 4.83e-01 | 92.7% | 100.0% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 43.0 | 3.61e-01 | 85.5% | 86.5% |
| 1ywqA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 48.0 | 3.34e-01 | 100.0% | 45.7% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.56 | 40.0 | 3.74e-01 | 80.0% | 61.2% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.55 | 42.0 | 3.38e-01 | 85.5% | 71.9% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.55 | 44.0 | 3.68e-01 | 98.2% | 85.7% |
| 5wbwA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.54 | 44.0 | 3.26e-01 | 92.7% | 92.4% |
| 4irfB00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.54 | 45.0 | 3.42e-01 | 98.2% | 41.0% |
| 7d5qA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 41.0 | 3.06e-01 | 100.0% | 77.5% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 40.0 | 3.30e-01 | 90.9% | 79.3% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.52 | 38.0 | 2.81e-01 | 85.5% | 34.1% |
| 5ko4A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 38.0 | 3.27e-01 | 85.5% | 58.4% |
| 2qdjA03 | 1.10.472.140 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.51 | 43.0 | 3.50e-01 | 100.0% | 69.8% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.51 | 44.0 | 3.97e-01 | 96.4% | 76.6% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.51 | 41.0 | 3.37e-01 | 92.7% | 79.1% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 45.0 | 3.65e-01 | 100.0% | 78.3% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.51 | 44.0 | 3.73e-01 | 98.2% | 78.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3475068 | 2008.1.1.29 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 | 0.78 | 68.0 | 4.29e-01 | 100.0% | 22.1% |
| 4112281 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.77 | 62.0 | 6.22e-01 | 98.2% | 87.3% |
| 5032990 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.77 | 64.0 | 5.91e-01 | 100.0% | 72.9% |
| 3010699 | 3276.1.1.0 ↗ | alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor | 0.76 | 55.0 | 5.40e-01 | 100.0% | 70.5% |
| 3283680 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.72 | 55.0 | 4.35e-01 | 81.8% | 86.4% |
| 4596379 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.72 | 62.0 | 5.74e-01 | 98.2% | 78.6% |
| 3839206 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.71 | 64.0 | 5.62e-01 | 100.0% | 68.8% |
| 3592355 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.71 | 59.0 | 5.58e-01 | 100.0% | 92.9% |
| 3480146 | 101.1.2.178 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_61 | 0.70 | 59.0 | 4.84e-01 | 100.0% | 55.5% |
| 3511345 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.70 | 58.0 | 3.90e-01 | 100.0% | 35.8% |
| 3248090 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.69 | 59.0 | 5.31e-01 | 100.0% | 68.8% |
| 4112500 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.68 | 52.0 | 5.21e-01 | 98.2% | 85.5% |
| 4086177 | 605.1.1.163 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF27790 | 0.67 | 52.0 | 4.59e-01 | 94.5% | 58.7% |
| 3385552 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.63 | 51.0 | 4.39e-01 | 90.9% | 61.1% |
| 4993098 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.62 | 46.0 | 3.83e-01 | 80.0% | 99.0% |
| 4014874 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 53.0 | 4.00e-01 | 100.0% | 41.4% |
| 4980482 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.60 | 41.0 | 3.10e-01 | 89.1% | 30.0% |
| 5054639 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.59 | 41.0 | 3.09e-01 | 78.2% | 28.3% |
| 3213752 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 51.0 | 4.15e-01 | 100.0% | 52.4% |
| 5046776 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.58 | 39.0 | 3.75e-01 | 74.5% | 60.0% |
| 5052887 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.58 | 47.0 | 4.30e-01 | 98.2% | 86.3% |
| 3212553 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.56 | 39.0 | 3.30e-01 | 74.5% | 43.0% |
| 4329562 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.56 | 39.0 | 3.19e-01 | 76.4% | 73.0% |
| 3364093 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 43.0 | 4.16e-01 | 92.7% | 76.9% |
| 4004156 | 109.4.1.147 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind | 0.54 | 47.0 | 2.86e-01 | 100.0% | 18.2% |
| 4221177 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 37.0 | 3.85e-01 | 72.7% | 80.0% |