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IMGVR_UViG_3300022888_000502-3300022888-Ga0233428_10095907

Arc-Vir

IMGVR_UViG_3300022888_000502-3300022888-Ga0233428_10095907

Quality

94.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-38
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wshA00 3.40.1440.40 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.73 48.0 3.20e-01 100.0% 18.7%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.68 41.0 4.16e-01 88.9% 55.6%
6n8eA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.64 41.0 2.68e-01 91.7% 13.4%
2ctdA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.64 36.0 2.67e-01 88.9% 18.8%
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.63 41.0 4.22e-01 72.2% 67.6%
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 48.0 3.51e-01 100.0% 31.6%
2fnqA02 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.62 43.0 2.42e-01 100.0% 6.1%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.61 48.0 4.03e-01 97.2% 86.5%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.61 46.0 2.62e-01 100.0% 8.1%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 3.92e-01 100.0% 82.2%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 47.0 3.04e-01 91.7% 52.9%
2hekA02 3.30.70.1370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › HD domain like 0.61 38.0 2.90e-01 97.2% 26.1%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.60 49.0 3.37e-01 91.7% 44.0%
3rbtD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 43.0 3.06e-01 80.6% 58.4%
3v7iA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 43.0 2.87e-01 94.4% 19.0%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 46.0 3.53e-01 91.7% 37.6%
3pe5A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.58 47.0 2.77e-01 88.9% 28.2%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.58 48.0 3.33e-01 94.4% 37.3%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.71e-01 100.0% 52.9%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 47.0 3.29e-01 94.4% 36.4%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 3.71e-01 100.0% 54.7%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.72e-01 72.2% 57.1%
1qgiA01 3.30.386.10 Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 0.56 42.0 2.96e-01 94.4% 69.4%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 46.0 2.84e-01 97.2% 91.9%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.55 42.0 2.66e-01 100.0% 14.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.55 45.0 3.27e-01 100.0% 38.1%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.55 42.0 2.48e-01 100.0% 75.6%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.55 42.0 3.87e-01 100.0% 86.0%
3aleA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 35.0 2.42e-01 100.0% 16.8%
2y3mA02 3.30.1370.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 42.0 3.66e-01 100.0% 55.4%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.25e-01 100.0% 67.3%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.42e-01 100.0% 75.5%
3h5xA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.54 41.0 3.19e-01 91.7% 41.1%
4rckA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.54 40.0 2.61e-01 88.9% 46.6%
4ijdA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 36.0 3.90e-01 88.9% 80.6%
3vhtB02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 38.0 3.87e-01 97.2% 82.4%
6n10A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 42.0 2.76e-01 100.0% 18.4%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 44.0 3.15e-01 100.0% 38.7%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.53 46.0 3.34e-01 100.0% 42.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 45.0 3.19e-01 94.4% 36.7%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 43.0 3.04e-01 94.4% 93.4%
2ckwA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.53 38.0 2.89e-01 100.0% 29.0%
7yj5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 44.0 2.95e-01 97.2% 36.8%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.52 44.0 2.94e-01 100.0% 70.1%
1tvzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 35.0 2.54e-01 77.8% 19.0%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 36.0 3.22e-01 83.3% 44.1%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 37.0 2.53e-01 97.2% 20.0%
4jdpA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 47.0 3.36e-01 100.0% 48.0%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.26e-01 97.2% 52.7%
1vjrA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 45.0 3.22e-01 100.0% 44.4%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 42.0 2.39e-01 97.2% 27.4%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.51 44.0 3.41e-01 94.4% 48.1%
3wxyA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 43.0 2.87e-01 100.0% 27.9%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.50 39.0 3.18e-01 86.1% 72.2%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 34.0 2.71e-01 94.4% 27.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583392 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.69 43.0 3.37e-01 97.2% 30.7%
5054633 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.68 49.0 2.98e-01 77.8% 14.7%
3718742 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 51.0 2.78e-01 100.0% 9.7%
4981261 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.66 41.0 3.17e-01 97.2% 28.0%
3584418 109.4.1.390 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 0.65 46.0 2.75e-01 100.0% 11.0%
3197800 221.13.1.2 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › RRG1_C 0.65 44.0 2.86e-01 72.2% 28.5%
3530014 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.64 46.0 2.48e-01 97.2% 4.1%
3492011 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.62 49.0 2.85e-01 100.0% 25.5%
3500505 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.62 49.0 2.90e-01 100.0% 24.5%
3268682 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.62 48.0 3.02e-01 100.0% 37.1%
3414454 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.61 50.0 2.90e-01 100.0% 22.5%
4455616 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.61 48.0 2.81e-01 100.0% 24.9%
4932163 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.61 47.0 3.90e-01 100.0% 96.2%
4030489 109.4.1.3424 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF6831, DUF6832 0.61 43.0 2.62e-01 100.0% 10.8%
3697668 386.1.1.346 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF28332 0.61 43.0 2.69e-01 97.2% 13.3%
4585482 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.60 49.0 2.87e-01 100.0% 25.5%
5030079 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.60 45.0 2.53e-01 83.3% 6.5%
4096321 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.60 47.0 2.79e-01 100.0% 25.1%
4298539 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.59 51.0 2.81e-01 100.0% 14.6%
4149109 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.59 49.0 3.82e-01 100.0% 54.1%
5027627 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 43.0 3.71e-01 97.2% 50.9%
3600861 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 44.0 2.92e-01 100.0% 20.7%
3244217 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.59 49.0 3.46e-01 100.0% 46.4%
3450312 7581.1.1.6 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.58 45.0 2.88e-01 86.1% 29.4%
5012330 2498.1.1.35 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.58 48.0 2.99e-01 100.0% 21.3%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 46.0 3.20e-01 88.9% 35.2%
4002861 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.58 48.0 2.83e-01 100.0% 25.9%
5025927 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.06e-01 80.6% 36.4%
3174660 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 38.0 2.83e-01 91.7% 27.8%
4851507 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 42.0 2.86e-01 83.3% 18.6%
5003982 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.57 48.0 3.48e-01 100.0% 71.8%
4012648 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.57 45.0 2.65e-01 100.0% 32.6%
3816855 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 38.0 2.76e-01 72.2% 50.4%
3442404 192.11.1.0 alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB 0.56 41.0 2.67e-01 91.7% 17.0%
4940693 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.51e-01 100.0% 72.0%
3924916 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.56 43.0 2.52e-01 100.0% 23.4%
3701729 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.56 44.0 2.66e-01 100.0% 14.5%
3589156 268.2.1.1 a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr 0.56 44.0 2.82e-01 100.0% 86.8%
4990406 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.56 46.0 2.59e-01 100.0% 35.8%
4457710 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 46.0 3.22e-01 94.4% 34.2%
4094061 101.1.9.98 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.55 47.0 3.67e-01 100.0% 67.1%
3171568 3883.1.1.1 alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.55 46.0 2.84e-01 94.4% 44.3%
5080529 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 46.0 3.51e-01 100.0% 75.8%
4546696 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.54 43.0 3.34e-01 97.2% 54.4%
158313 4967.1.1.2 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_1 0.54 45.0 3.17e-01 100.0% 29.1%
3099741 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.54 42.0 3.27e-01 97.2% 76.8%
4955068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.38e-01 97.2% 77.6%
3214720 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 46.0 3.42e-01 100.0% 64.2%
3801449 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 46.0 2.71e-01 100.0% 15.8%
4932117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 2.77e-01 75.0% 24.8%
3502008 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.53 44.0 3.14e-01 97.2% 87.8%
3405179 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 36.0 3.54e-01 88.9% 67.5%
5047912 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.51 42.0 3.44e-01 97.2% 50.8%
4946773 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.51 42.0 2.52e-01 100.0% 25.8%
3973554 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.50 43.0 3.27e-01 100.0% 47.7%