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IMGVR_UViG_3300022888_000545-3300022888-Ga0233428_10079506

Arc-Vir

IMGVR_UViG_3300022888_000545-3300022888-Ga0233428_10079506

Quality

86.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-91
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 48.0 4.40e-01 71.9% 82.5%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 56.0 4.40e-01 89.9% 78.9%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.66 59.0 5.54e-01 100.0% 96.3%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 54.0 4.45e-01 89.9% 95.1%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 52.0 4.27e-01 86.5% 100.0%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 49.0 5.22e-01 97.8% 93.7%
4mb7A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.63 47.0 4.19e-01 78.7% 88.9%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.62 50.0 4.35e-01 89.9% 84.9%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 4.05e-01 74.2% 79.7%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 51.0 3.57e-01 93.3% 89.2%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.62 45.0 3.69e-01 77.5% 67.8%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 45.0 3.52e-01 77.5% 96.0%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 54.0 4.55e-01 96.6% 66.4%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.61 43.0 4.27e-01 77.5% 69.1%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.61 48.0 4.02e-01 86.5% 58.4%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 49.0 4.95e-01 98.9% 92.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.45e-01 95.5% 93.7%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 3.93e-01 79.8% 90.0%
2zxkA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.58 50.0 3.69e-01 100.0% 77.4%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 46.0 3.72e-01 87.6% 87.0%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 48.0 4.30e-01 93.3% 85.3%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 45.0 3.75e-01 86.5% 86.5%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 48.0 4.24e-01 93.3% 85.6%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 46.0 3.22e-01 85.4% 79.6%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.57 43.0 4.09e-01 89.9% 67.6%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.82e-01 83.1% 66.7%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.34e-01 96.6% 64.4%
3cmbA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.56 43.0 3.14e-01 83.1% 82.6%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.98e-01 88.8% 77.7%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.53e-01 74.2% 99.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.52e-01 82.0% 82.5%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.55 49.0 4.40e-01 98.9% 99.2%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 40.0 3.49e-01 84.3% 51.4%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 46.0 4.32e-01 95.5% 86.9%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 3.80e-01 89.9% 69.7%
2cjgA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 3.80e-01 100.0% 58.4%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.51 40.0 3.06e-01 86.5% 85.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 4.02e-01 83.1% 100.0%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 4.03e-01 87.6% 84.4%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.50 41.0 3.59e-01 91.0% 83.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044247 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.75 66.0 4.91e-01 95.5% 93.0%
3282412 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.74 50.0 4.48e-01 76.4% 50.4%
3386462 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 50.0 4.74e-01 80.9% 61.9%
3286246 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 52.0 4.89e-01 77.5% 89.4%
5003221 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.69 62.0 5.72e-01 100.0% 95.7%
4380331 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.69 49.0 5.42e-01 73.0% 94.3%
3947082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 52.0 5.25e-01 80.9% 97.8%
4498032 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.68 56.0 4.24e-01 89.9% 81.2%
3666858 9.1.1.9 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.67 59.0 4.58e-01 100.0% 83.3%
4057965 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.67 55.0 4.21e-01 89.9% 78.0%
5013679 3369.1.1.0 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.67 59.0 5.56e-01 98.9% 93.6%
3994778 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 47.0 4.05e-01 74.2% 62.6%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 55.0 5.51e-01 97.8% 92.2%
3658748 4099.1.1.14 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Knl1_RWD_C 0.65 52.0 5.00e-01 85.4% 90.0%
3062889 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 52.0 4.21e-01 88.8% 96.0%
3393795 77.1.1.3 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.63 48.0 3.43e-01 80.9% 64.6%
3250629 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.63 43.0 4.16e-01 71.9% 68.6%
3827179 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.62 42.0 4.65e-01 100.0% 88.6%
4115704 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 43.0 4.57e-01 95.5% 84.0%
3459135 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.62 50.0 4.69e-01 87.6% 97.3%
4991489 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 41.0 4.50e-01 95.5% 85.7%
3719596 77.1.1.3 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.62 47.0 3.76e-01 79.8% 92.9%
3462999 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.61 42.0 4.63e-01 100.0% 90.0%
3624850 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.61 47.0 4.46e-01 94.4% 68.6%
3856612 319.1.1.9 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DPCD 0.61 48.0 3.81e-01 84.3% 77.3%
5019856 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 43.0 4.39e-01 73.0% 85.9%
3585414 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.61 55.0 5.13e-01 100.0% 87.3%
2390064 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.61 43.0 3.35e-01 79.8% 33.7%
3787121 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 54.0 4.83e-01 100.0% 96.0%
3661138 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.60 55.0 4.68e-01 100.0% 95.7%
1097232 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.60 47.0 4.42e-01 83.1% 76.6%
3380259 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 48.0 4.54e-01 86.5% 96.2%
3918280 5.1.4.255 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.60 45.0 2.97e-01 80.9% 41.5%
3901954 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 46.0 3.93e-01 83.1% 64.6%
3699899 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.59 52.0 4.77e-01 100.0% 80.8%
4345080 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 38.0 4.28e-01 91.0% 89.2%
3583345 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.58 46.0 3.02e-01 88.8% 50.2%
4008120 5.1.5.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.58 45.0 4.05e-01 82.0% 80.0%
4216680 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 44.0 4.42e-01 100.0% 77.4%
3597599 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.58 51.0 4.98e-01 100.0% 97.0%
3262671 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 49.0 2.91e-01 93.3% 20.2%
4993192 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 39.0 4.35e-01 77.5% 95.4%
3932751 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.57 46.0 4.06e-01 86.5% 91.5%
3502044 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.57 39.0 3.75e-01 70.8% 82.9%
4600963 3188.1.1.0 beta duplicates or obligate multimers › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) 0.56 43.0 3.14e-01 83.1% 82.6%
4459482 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.56 44.0 3.28e-01 83.1% 47.4%
3823787 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.56 49.0 4.26e-01 98.9% 76.4%
3947246 331.3.1.19 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VanA_C 0.56 46.0 3.62e-01 93.3% 66.5%
4386896 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 44.0 3.03e-01 84.3% 38.4%
3404834 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.55 44.0 4.67e-01 96.6% 96.2%
3233720 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 3.07e-01 88.8% 66.5%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.54 44.0 3.85e-01 87.6% 90.4%
3551142 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.54 44.0 3.74e-01 87.6% 83.4%
230344 3188.1.1.1 beta duplicates or obligate multimers › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › SBD 0.54 43.0 3.17e-01 91.0% 92.5%
3242312 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 44.0 3.18e-01 94.4% 86.6%
3935550 210.1.2.8 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.53 46.0 3.26e-01 95.5% 57.8%
2724361 3188.1.1.1 beta duplicates or obligate multimers › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › SBD 0.53 43.0 3.78e-01 89.9% 67.7%
None 0.52 43.0 3.30e-01 94.4% 53.9%
3407530 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.52 41.0 3.63e-01 86.5% 69.6%
3943894 77.1.1.7 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.52 45.0 4.03e-01 95.5% 82.4%