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IMGVR_UViG_3300022888_000765-3300022888-Ga0233428_10125441
Arc-VirIMGVR_UViG_3300022888_000765-3300022888-Ga0233428_10125441
Identity
- Kingdom:
- archaea
Quality
89.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-75
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01327.27 best | Pep_deformylase | 35.2 | 1.30e-08 | 72.7% | 28.8% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.80 | 64.0 | 4.73e-01 | 87.9% | 35.9% |
| 3qu1A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.65 | 55.0 | 4.17e-01 | 98.5% | 38.1% |
| 2nscA01 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.62 | 39.0 | 3.66e-01 | 100.0% | 53.8% |
| 4pk9A00 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.59 | 49.0 | 3.07e-01 | 90.9% | 73.5% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.54 | 37.0 | 2.70e-01 | 72.7% | 91.3% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.53 | 40.0 | 3.12e-01 | 84.8% | 65.5% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 39.0 | 2.90e-01 | 81.8% | 52.5% |
| 1h0hA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 35.0 | 2.46e-01 | 75.8% | 97.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 168447 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.83 | 63.0 | 4.49e-01 | 81.8% | 28.8% |
| 3427612 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.81 | 62.0 | 4.38e-01 | 83.3% | 28.6% |
| 4224338 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.81 | 61.0 | 4.31e-01 | 81.8% | 27.9% |
| 4422867 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 60.0 | 4.24e-01 | 83.3% | 27.9% |
| 981342 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.78 | 60.0 | 4.28e-01 | 87.9% | 29.7% |
| 4256308 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.77 | 58.0 | 4.32e-01 | 83.3% | 33.1% |
| 4096233 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.75 | 62.0 | 4.56e-01 | 93.9% | 34.5% |
| 4220709 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.75 | 62.0 | 4.63e-01 | 93.9% | 37.1% |
| 4275485 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.72 | 64.0 | 4.74e-01 | 100.0% | 38.8% |
| 4039287 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.68 | 58.0 | 4.38e-01 | 98.5% | 50.6% |
| 3998938 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.62 | 45.0 | 2.70e-01 | 77.3% | 34.9% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.58 | 49.0 | 3.63e-01 | 92.4% | 58.8% |
| 3387155 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.57 | 37.0 | 2.69e-01 | 71.2% | 22.6% |
| 3444901 | 4954.1.1.0 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit | 0.57 | 38.0 | 2.77e-01 | 72.7% | 26.3% |
| 3939832 | 2006.1.6.39 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb | 0.52 | 46.0 | 3.14e-01 | 100.0% | 65.7% |
| 3248192 | 7581.1.1.39 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C, FAE1_CUT1_RppA | 0.52 | 43.0 | 2.63e-01 | 90.9% | 66.1% |
| 3629758 | 577.1.1.1 ↗ | alpha arrays › CRIB domain › CRIB domain › CRIB domain › PBD | 0.52 | 35.0 | 3.42e-01 | 71.2% | 91.8% |
| 3798928 | 59.1.4.2 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 | 0.50 | 43.0 | 2.61e-01 | 98.5% | 17.6% |