←Back to structures
IMGVR_UViG_3300022902_001377-3300022902-Ga0233429_10108202
Arc-VirIMGVR_UViG_3300022902_001377-3300022902-Ga0233429_10108202
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-221
Domain cluster:
rep: H1c1_full_scaffold_271_prodigal-single.1__X__X__00095__D8-178_280-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00579.32 best | tRNA-synt_1b | 68.0 | 1.20e-18 | 89.5% | 59.2% |
D2
high
residues 258-371
Domain cluster:
rep: tyrosyl-tRNA_synthetase__YP_003986615__Acanthamoeba_polyphaga_mimivirus__212035__D246-342
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00579.32 best | tRNA-synt_1b | 23.1 | 5.90e-05 | 79.8% | 29.1% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dlcX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.95 | 89.0 | 8.55e-01 | 97.4% | 95.2% |
| 2cyaA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.95 | 86.0 | 8.31e-01 | 98.2% | 86.2% |
| 2j5bA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.90 | 78.0 | 7.68e-01 | 96.5% | 85.1% |
| 3p0jA03 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.90 | 72.0 | 7.89e-01 | 88.6% | 100.0% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.85 | 58.0 | 6.34e-01 | 89.5% | 84.0% |
| 3p0hB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.82 | 78.0 | 5.52e-01 | 100.0% | 40.8% |
| 6ncrA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.82 | 64.0 | 6.64e-01 | 92.1% | 86.1% |
| 3tzeA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.80 | 60.0 | 6.22e-01 | 88.6% | 81.5% |
| 3tzlA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.79 | 60.0 | 6.24e-01 | 91.2% | 85.6% |
| 3hzrA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.74 | 61.0 | 6.20e-01 | 89.5% | 87.4% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.55 | 30.0 | 3.80e-01 | 71.9% | 98.3% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 39.0 | 4.14e-01 | 73.7% | 86.9% |
| 1g4uS01 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.53 | 42.0 | 4.08e-01 | 86.8% | 94.5% |
| 1efzA00 | 3.20.20.105 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like | 0.53 | 44.0 | 3.14e-01 | 93.0% | 29.0% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 44.0 | 4.35e-01 | 91.2% | 93.2% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.52 | 30.0 | 3.08e-01 | 86.8% | 58.7% |
| 6w08A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.51 | 42.0 | 3.02e-01 | 90.4% | 75.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048102 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.98 | 93.0 | 6.31e-01 | 99.1% | 33.6% |
| 5079552 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.97 | 93.0 | 6.09e-01 | 98.2% | 29.1% |
| 4967192 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.97 | 79.0 | 5.45e-01 | 84.2% | 29.5% |
| 4023690 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.97 | 94.0 | 6.23e-01 | 100.0% | 31.2% |
| 4979586 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.96 | 93.0 | 6.18e-01 | 99.1% | 31.5% |
| 3614377 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.95 | 90.0 | 6.16e-01 | 100.0% | 33.4% |
| 5012077 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.95 | 91.0 | 6.13e-01 | 100.0% | 32.2% |
| 4971292 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.94 | 90.0 | 7.49e-01 | 99.1% | 63.9% |
| 4061943 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.94 | 89.0 | 6.02e-01 | 97.4% | 33.2% |
| 3997952 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.94 | 88.0 | 6.02e-01 | 98.2% | 33.8% |
| 3233553 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.93 | 88.0 | 5.91e-01 | 98.2% | 32.9% |
| 4013546 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.93 | 86.0 | 5.83e-01 | 95.6% | 33.5% |
| 3465691 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.92 | 86.0 | 5.87e-01 | 97.4% | 32.6% |
| 3722941 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.91 | 87.0 | 5.93e-01 | 100.0% | 34.6% |
| 5001337 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.91 | 87.0 | 5.85e-01 | 100.0% | 30.8% |
| 4671800 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.79 | 65.0 | 4.47e-01 | 92.1% | 28.5% |
| 5082433 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.79 | 64.0 | 4.79e-01 | 89.5% | 38.4% |
| 5058738 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.78 | 63.0 | 4.28e-01 | 89.5% | 27.1% |
| 4133327 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.78 | 62.0 | 4.15e-01 | 89.5% | 24.7% |
| 5067873 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.78 | 63.0 | 4.22e-01 | 89.5% | 25.6% |
| 4961918 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.76 | 63.0 | 4.20e-01 | 91.2% | 24.9% |
| 5007762 | 7512.1.1.32 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 | 0.60 | 47.0 | 3.97e-01 | 85.1% | 95.4% |
| 3470130 | 219.1.1.81 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD | 0.59 | 51.0 | 3.77e-01 | 95.6% | 68.3% |
| 5036861 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.52 | 38.0 | 2.86e-01 | 75.4% | 78.3% |
| 4104975 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.51 | 44.0 | 3.13e-01 | 95.6% | 30.0% |
| 3405303 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.51 | 44.0 | 3.11e-01 | 99.1% | 33.7% |