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IMGVR_UViG_3300022902_001387-3300022902-Ga0233429_10148061

Arc-Vir

IMGVR_UViG_3300022902_001387-3300022902-Ga0233429_10148061

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-75
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05066.20 best HARE-HTH 30.4 5.70e-07 95.7% 54.9%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x1aA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 59.0 4.31e-01 100.0% 30.5%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 5.94e-01 100.0% 70.1%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 68.0 6.09e-01 100.0% 69.6%
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 61.0 5.84e-01 100.0% 72.2%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 4.73e-01 100.0% 44.0%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 6.42e-01 100.0% 85.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 6.20e-01 100.0% 78.0%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 5.13e-01 100.0% 54.8%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 5.80e-01 100.0% 75.9%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 5.01e-01 100.0% 56.6%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 5.75e-01 100.0% 70.3%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 4.95e-01 100.0% 57.3%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 5.36e-01 100.0% 63.8%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 55.0 5.44e-01 100.0% 76.7%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 4.90e-01 100.0% 59.1%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 65.0 5.72e-01 100.0% 70.6%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 6.01e-01 100.0% 93.8%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.87e-01 100.0% 96.7%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.86e-01 100.0% 80.7%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 5.58e-01 100.0% 69.8%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 5.36e-01 100.0% 65.0%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.70 55.0 3.89e-01 100.0% 27.0%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.21e-01 100.0% 62.9%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.64e-01 100.0% 77.5%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 62.0 5.39e-01 100.0% 68.9%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.61e-01 100.0% 79.8%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 5.68e-01 100.0% 90.1%
2rkhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.94e-01 100.0% 68.2%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.34e-01 100.0% 57.3%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.26e-01 100.0% 78.6%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.07e-01 98.6% 75.0%
1zelA01 3.90.56.20 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain 0.65 50.0 4.56e-01 100.0% 61.2%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.05e-01 100.0% 80.0%
2xubA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 5.12e-01 100.0% 75.0%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 47.0 4.86e-01 100.0% 87.7%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 4.90e-01 100.0% 72.3%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 4.69e-01 100.0% 69.3%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.03e-01 100.0% 60.7%
2lvvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 50.0 3.60e-01 97.1% 35.9%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.51e-01 100.0% 76.2%
3c1dB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 4.31e-01 97.1% 90.3%
3iu0A00 3.90.1360.10 Alpha Beta › Alpha-Beta Complex › Microbial transglutaminase. Chain: a › Protein-glutamine gamma-glutamyltransferase 0.56 46.0 2.96e-01 100.0% 18.4%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.55 47.0 3.98e-01 100.0% 56.5%
2oy9A01 1.10.220.80 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › BH2638-like 0.54 38.0 3.72e-01 98.6% 68.4%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.53 38.0 3.02e-01 79.7% 65.6%
1nw9B00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 37.0 2.64e-01 100.0% 22.3%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 38.0 2.83e-01 84.1% 67.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037497 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.80 67.0 4.59e-01 100.0% 28.0%
3624335 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 62.0 4.62e-01 100.0% 33.7%
5029501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 68.0 5.33e-01 100.0% 47.1%
4999504 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 72.0 5.87e-01 100.0% 60.8%
3554755 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 69.0 6.77e-01 100.0% 94.7%
3280466 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 71.0 5.03e-01 100.0% 37.4%
5011856 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 6.55e-01 98.6% 96.9%
5074322 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 6.07e-01 100.0% 79.7%
3357833 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.76 65.0 6.20e-01 100.0% 81.2%
5051738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 60.0 6.02e-01 100.0% 84.3%
5046227 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 64.0 5.99e-01 100.0% 76.5%
3281879 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 67.0 4.91e-01 100.0% 39.4%
5011183 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 66.0 5.68e-01 100.0% 70.9%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 67.0 5.45e-01 100.0% 62.4%
3396920 101.1.2.144 alpha arrays › HTH › HTH › winged helix domain › NFRKB_winged 0.74 66.0 5.57e-01 100.0% 75.7%
3179239 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.73 64.0 6.01e-01 100.0% 78.8%
3729991 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.73 65.0 5.65e-01 100.0% 68.6%
3228605 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.73 64.0 4.71e-01 100.0% 37.3%
5071694 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 5.55e-01 100.0% 63.6%
4980135 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 62.0 5.38e-01 100.0% 61.1%
3358560 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.72 61.0 6.03e-01 100.0% 88.0%
3490863 101.1.2.515 alpha arrays › HTH › HTH › winged helix domain › WH_2nd_NFRKB 0.72 63.0 5.64e-01 100.0% 72.0%
4943354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 6.04e-01 100.0% 84.8%
5065308 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 64.0 5.32e-01 100.0% 64.2%
4985898 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 5.46e-01 95.7% 68.9%
4976651 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 6.31e-01 100.0% 95.7%
4969033 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 4.58e-01 100.0% 37.2%
4948021 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 55.0 5.26e-01 100.0% 72.5%
4600309 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.71 62.0 5.51e-01 100.0% 68.0%
4955909 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 62.0 5.39e-01 100.0% 70.9%
4988433 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 5.66e-01 89.9% 100.0%
3532208 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.71 61.0 4.53e-01 100.0% 36.8%
4933807 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 62.0 5.83e-01 100.0% 87.1%
4024318 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 5.81e-01 100.0% 83.5%
3593675 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 4.79e-01 100.0% 71.2%
5060192 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.46e-01 94.2% 89.2%
4927328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.18e-01 100.0% 67.4%
4392375 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 60.0 5.23e-01 100.0% 67.3%
5041402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.43e-01 94.2% 89.2%
3963083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 62.0 4.93e-01 100.0% 52.6%
5024927 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.69 63.0 5.41e-01 100.0% 66.7%
3450461 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 61.0 4.78e-01 100.0% 47.6%
4963412 101.1.2.938 alpha arrays › HTH › HTH › winged helix domain › PF25947 0.68 61.0 5.71e-01 100.0% 81.2%
3423732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 5.31e-01 100.0% 71.0%
4543264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 4.49e-01 100.0% 46.7%
4972648 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.66 59.0 3.88e-01 100.0% 24.2%
3519165 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.40e-01 100.0% 83.5%
3442533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.66 56.0 4.78e-01 100.0% 56.7%
3441807 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.66 57.0 5.36e-01 100.0% 84.7%
3642660 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.66 57.0 4.46e-01 100.0% 49.0%
4998740 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.93e-01 91.3% 73.3%
5062452 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.66 58.0 5.44e-01 100.0% 82.4%
5070069 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.66 56.0 3.62e-01 98.6% 21.7%
3382543 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.23e-01 100.0% 80.0%
5071551 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.10e-01 100.0% 71.6%
3426019 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.65 56.0 4.47e-01 100.0% 51.0%
3412839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.50e-01 100.0% 92.0%
3332622 101.1.2.304 alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.61 52.0 5.09e-01 100.0% 93.3%
3940475 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.86e-01 100.0% 90.0%
3599768 108.1.1.44 alpha arrays › EF-hand › EF-hand-related › EF-hand › FCaBP_EF-hand 0.58 49.0 3.89e-01 100.0% 55.0%
3691381 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.58 46.0 4.55e-01 97.1% 84.0%
3718884 108.1.1.44 alpha arrays › EF-hand › EF-hand-related › EF-hand › FCaBP_EF-hand 0.57 48.0 4.32e-01 100.0% 80.0%
3809406 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.56 44.0 3.93e-01 88.4% 67.6%
4020224 101.1.2.359 alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.54 46.0 4.17e-01 100.0% 71.0%