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IMGVR_UViG_3300022902_001387-3300022902-Ga0233429_10148064
Arc-VirIMGVR_UViG_3300022902_001387-3300022902-Ga0233429_10148064
Identity
- Kingdom:
- archaea
Quality
92.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-81
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05315.17 best | ICEA | 96.0 | 3.50e-27 | 100.0% | 34.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 58.0 | 5.60e-01 | 94.9% | 93.4% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 53.0 | 4.94e-01 | 93.7% | 95.1% |
| 3m1cA01 | 3.10.360.40 | Alpha Beta › Roll › Antimicrobial Peptide, Beta-defensin 2; Chain A › | 0.63 | 35.0 | 4.08e-01 | 92.4% | 80.8% |
| 3ke2B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.40e-01 | 94.9% | 67.7% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 3.43e-01 | 75.9% | 56.5% |
| 3pqvC01 | 3.65.10.20 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain | 0.51 | 42.0 | 3.02e-01 | 93.7% | 61.2% |
| 1izjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 39.0 | 2.56e-01 | 87.3% | 19.9% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 3.43e-01 | 78.5% | 63.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4344086 | 101.1.2.812 ↗ | alpha arrays › HTH › HTH › winged helix domain › ICEA | 0.98 | 92.0 | 9.18e-01 | 96.2% | 95.0% |
| 3588765 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.68 | 56.0 | 5.10e-01 | 92.4% | 82.7% |
| 3983446 | 101.1.2.84 ↗ | alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA | 0.61 | 51.0 | 4.74e-01 | 93.7% | 74.0% |
| 5057098 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 52.0 | 4.26e-01 | 98.7% | 53.0% |
| 3599928 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 49.0 | 4.29e-01 | 94.9% | 77.6% |
| 3269500 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 46.0 | 4.37e-01 | 93.7% | 73.7% |
| 3187043 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.33e-01 | 91.1% | 87.8% |
| 4955129 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.55 | 47.0 | 3.75e-01 | 94.9% | 61.3% |
| 5030783 | 242.1.1.3 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end | 0.55 | 44.0 | 4.24e-01 | 96.2% | 74.7% |
| 3217172 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 40.0 | 3.37e-01 | 78.5% | 69.7% |
| 3798409 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 39.0 | 3.91e-01 | 77.2% | 73.8% |
| 3876482 | 4956.1.1.1 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.54 | 39.0 | 3.91e-01 | 77.2% | 75.0% |
| 3212979 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 39.0 | 3.67e-01 | 78.5% | 63.2% |
| 3595010 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 4.09e-01 | 92.4% | 94.0% |
| 4086765 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.53 | 42.0 | 3.89e-01 | 94.9% | 65.5% |
| 3434686 | 101.1.2.245 ↗ | alpha arrays › HTH › HTH › winged helix domain › PORR | 0.53 | 46.0 | 4.07e-01 | 100.0% | 85.8% |
D2
medium
residues 84-150
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05315.17 best | ICEA | 74.3 | 1.50e-20 | 100.0% | 30.7% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.67 | 59.0 | 4.66e-01 | 100.0% | 56.3% |
| 3plwA00 | 3.30.40.190 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.63 | 57.0 | 4.83e-01 | 100.0% | 70.0% |
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.59 | 50.0 | 4.80e-01 | 100.0% | 81.2% |
| 4ccgY00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 42.0 | 4.28e-01 | 85.1% | 76.1% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.53 | 45.0 | 3.50e-01 | 100.0% | 48.1% |
| 1aduB02 | 3.90.148.10 | Alpha Beta › Alpha-Beta Complex › Adenovirus Single-stranded DNA-binding Protein; domain 2 › Adenovirus DNA-binding, C-terminal domain superfamily/Adenovirus DNA-binding, zinc binding domain | 0.51 | 39.0 | 3.10e-01 | 83.6% | 70.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4607935 | 378.1.1.29 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › ICEA | 0.95 | 92.0 | 7.06e-01 | 100.0% | 52.3% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 64.0 | 5.66e-01 | 100.0% | 65.3% |
| 3978374 | 378.1.1.18 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF968 | 0.75 | 61.0 | 5.57e-01 | 100.0% | 68.2% |
| 3210225 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.75 | 64.0 | 5.22e-01 | 94.0% | 51.7% |
| 3952923 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.75 | 63.0 | 5.49e-01 | 100.0% | 62.0% |
| 5080395 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 67.0 | 5.54e-01 | 100.0% | 61.7% |
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.73 | 64.0 | 6.07e-01 | 100.0% | 81.2% |
| 4959590 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 64.0 | 5.90e-01 | 100.0% | 83.5% |
| 2628026 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.67 | 59.0 | 4.21e-01 | 100.0% | 32.7% |
| 4370946 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.65 | 54.0 | 4.06e-01 | 94.0% | 40.0% |
| 3723461 | 4099.1.1.9 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 | 0.57 | 47.0 | 3.69e-01 | 91.0% | 61.4% |
| 3906009 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.57 | 40.0 | 3.56e-01 | 92.5% | 50.0% |
| 3847015 | 192.7.1.79 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FYVE_2 | 0.55 | 38.0 | 4.00e-01 | 82.1% | 81.7% |
| 4965846 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.54 | 35.0 | 4.03e-01 | 77.6% | 100.0% |
D3
medium
residues 151-206
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05315.17 best | ICEA | 48.1 | 1.60e-12 | 98.2% | 23.8% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1atiB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 44.0 | 2.86e-01 | 98.2% | 53.8% |