←Back to structures

IMGVR_UViG_3300022912_000578-3300022912-Ga0233430_101301310

Arc-Vir

IMGVR_UViG_3300022912_000578-3300022912-Ga0233430_101301310

Identity

Kingdom:
archaea

Quality

91.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-106
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07508.20 best Recombinase 23.2 9.60e-05 80.3% 45.1%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.89 53.0 5.81e-01 81.8% 74.1%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 53.0 5.80e-01 81.8% 75.0%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 53.0 5.75e-01 86.4% 81.8%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.75 46.0 4.68e-01 75.8% 64.1%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.38e-01 81.8% 84.5%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.72 56.0 5.10e-01 86.4% 62.9%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 59.0 5.56e-01 100.0% 75.6%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 49.0 5.56e-01 84.8% 100.0%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.67 41.0 4.41e-01 78.8% 73.2%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 57.0 5.18e-01 95.5% 76.5%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.63 43.0 3.07e-01 71.2% 52.5%
1pbwB00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.63 50.0 3.65e-01 89.4% 33.3%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.62 47.0 4.66e-01 86.4% 80.9%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 43.0 4.71e-01 77.3% 100.0%
2mr7A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 45.0 4.07e-01 83.3% 72.5%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.58 42.0 3.61e-01 78.8% 96.4%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.58 48.0 4.11e-01 100.0% 77.3%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 44.0 3.53e-01 87.9% 46.1%
3c64A00 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.16e-01 98.5% 33.6%
2mw2A00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.55 43.0 4.33e-01 92.4% 85.1%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.54 38.0 3.69e-01 74.2% 70.7%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 44.0 3.57e-01 93.9% 50.0%
3mekA03 1.10.220.160 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.54 40.0 3.66e-01 78.8% 96.5%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 46.0 3.77e-01 100.0% 93.7%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 44.0 4.32e-01 100.0% 89.3%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.52 34.0 3.46e-01 78.8% 66.7%
2l9fA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 38.0 3.46e-01 84.8% 74.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032641 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.85 79.0 6.50e-01 98.5% 64.5%
3282557 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.85 80.0 5.57e-01 100.0% 61.1%
5028770 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.83 49.0 6.29e-01 75.8% 100.0%
3590291 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.83 77.0 5.75e-01 100.0% 62.0%
3957316 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.81 58.0 5.91e-01 90.9% 76.9%
4929680 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 62.0 6.53e-01 92.4% 90.0%
3958041 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 58.0 5.90e-01 90.9% 76.9%
3962597 101.1.3.13 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.80 58.0 5.90e-01 90.9% 76.9%
3422502 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.76 59.0 4.95e-01 90.9% 51.4%
5051842 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.74 50.0 4.44e-01 80.3% 51.1%
4336911 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 55.0 5.41e-01 89.4% 75.7%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.72 50.0 5.55e-01 86.4% 96.0%
4980082 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.70 53.0 3.47e-01 80.3% 20.0%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 49.0 5.48e-01 86.4% 100.0%
3665609 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.69 57.0 4.68e-01 100.0% 50.0%
3924709 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.67 48.0 4.86e-01 83.3% 78.5%
3226857 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.67 54.0 5.00e-01 90.9% 69.4%
3489868 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.66 54.0 4.94e-01 95.5% 67.8%
3578362 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.65 54.0 5.26e-01 92.4% 81.3%
3504540 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.65 47.0 5.00e-01 86.4% 92.7%
3984964 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.64 46.0 4.47e-01 86.4% 68.0%
3519665 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.44e-01 89.4% 62.2%
3222309 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 44.0 4.56e-01 80.3% 98.3%
3199243 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.60 52.0 3.01e-01 100.0% 13.5%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 53.0 4.98e-01 100.0% 91.3%
4676854 179.1.1.1 ↗ alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.58 48.0 4.15e-01 100.0% 80.0%
3991299 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.54 43.0 4.06e-01 90.9% 70.6%
3497513 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 43.0 3.71e-01 90.9% 94.5%
3724308 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 39.0 2.40e-01 77.3% 20.8%
3823871 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 43.0 3.80e-01 90.9% 93.0%
5044635 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.53 42.0 3.17e-01 89.4% 46.3%
3224616 604.1.1.230 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EFhand_Ca_insen, EF-hand_6, EF-hand_7 0.53 40.0 3.09e-01 83.3% 53.1%
4092142 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.52 40.0 4.20e-01 86.4% 98.3%
4170809 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.52 42.0 3.86e-01 92.4% 92.2%
4142142 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.50 41.0 3.21e-01 92.4% 43.9%