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IMGVR_UViG_3300022914_000481-3300022914-Ga0255767_10141911

Arc-Vir

IMGVR_UViG_3300022914_000481-3300022914-Ga0255767_10141911

Quality

72.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.78 53.0 5.15e-01 70.0% 74.0%
4jxtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.78 66.0 5.40e-01 94.3% 58.5%
3au3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.76 68.0 4.46e-01 100.0% 35.2%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.75 50.0 5.42e-01 72.9% 84.2%
2of3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.75 64.0 4.31e-01 95.7% 56.0%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.75 50.0 4.44e-01 70.0% 88.2%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.74 57.0 4.75e-01 82.9% 66.1%
3tjzB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.73 59.0 3.97e-01 88.6% 26.5%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.73 65.0 4.41e-01 100.0% 45.0%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 64.0 5.10e-01 100.0% 57.1%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.71 50.0 4.76e-01 74.3% 62.4%
1gw5B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 58.0 3.38e-01 100.0% 11.1%
3lxuX06 1.25.40.710 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 61.0 4.21e-01 100.0% 37.3%
1pn9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.70 60.0 4.92e-01 97.1% 75.4%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 50.0 4.82e-01 75.7% 87.3%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 57.0 5.33e-01 94.3% 77.3%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 47.0 4.31e-01 78.6% 54.2%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 58.0 4.84e-01 98.6% 81.6%
4l9mA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.67 56.0 4.58e-01 94.3% 60.9%
5bqnA02 1.20.1120.10 Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" 0.66 47.0 2.99e-01 75.7% 44.9%
4gpkB01 1.25.40.1000 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 45.0 4.04e-01 74.3% 50.5%
3dwlG00 1.25.40.190 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 0.65 57.0 4.85e-01 97.1% 67.5%
6fbtA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.65 48.0 4.74e-01 100.0% 73.7%
5ja4D00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 52.0 4.21e-01 94.3% 50.3%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 53.0 3.78e-01 94.3% 64.0%
1kpsB00 1.25.40.200 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ran-GTPase activating protein 1, C-terminal domain 0.64 53.0 4.12e-01 92.9% 63.5%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.62 47.0 4.14e-01 85.7% 95.6%
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 52.0 3.73e-01 94.3% 33.0%
3wirA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.61 52.0 3.34e-01 100.0% 32.6%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 49.0 3.84e-01 90.0% 73.9%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 41.0 4.12e-01 74.3% 79.7%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.59 44.0 4.21e-01 78.6% 71.6%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 40.0 3.63e-01 72.9% 58.6%
5k7fA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 48.0 3.99e-01 100.0% 78.3%
3czhA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 45.0 2.80e-01 91.4% 77.8%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.57 38.0 3.18e-01 70.0% 48.4%
3ceqA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 45.0 3.20e-01 94.3% 30.0%
4g84A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 40.0 2.65e-01 80.0% 27.0%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 40.0 3.73e-01 80.0% 67.4%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.54 48.0 4.16e-01 100.0% 89.9%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 48.0 4.55e-01 100.0% 98.8%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.54 46.0 3.72e-01 98.6% 77.9%
1dgfA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.53 44.0 3.89e-01 100.0% 76.3%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.52 46.0 3.79e-01 100.0% 74.2%
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 45.0 3.59e-01 97.1% 79.7%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 37.0 2.64e-01 75.7% 47.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027870 109.4.1.1201 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RESC6 0.78 67.0 4.29e-01 98.6% 19.7%
3706887 109.4.1.33 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT 0.76 65.0 4.74e-01 95.7% 40.0%
3502287 109.4.1.213 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FancD2 0.76 68.0 3.75e-01 100.0% 8.5%
3876294 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.76 63.0 3.82e-01 98.6% 14.0%
3392741 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.76 63.0 3.61e-01 98.6% 9.4%
3665059 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 62.0 5.46e-01 94.3% 61.0%
4080313 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.75 58.0 4.60e-01 82.9% 92.1%
3268810 109.4.1.170 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N 0.75 63.0 4.40e-01 94.3% 33.9%
3171532 109.4.1.3100 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_2, PPP2R1A-like_HEAT, VPS15-like_hel, TPR_DNAAF5 0.75 65.0 3.80e-01 100.0% 11.3%
163699 109.4.1.266 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG 0.75 64.0 4.31e-01 95.7% 56.0%
1881847 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.73 59.0 3.97e-01 88.6% 26.5%
3275370 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.73 63.0 3.91e-01 94.3% 18.4%
3508364 109.4.1.15 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS 0.73 62.0 4.58e-01 95.7% 41.1%
3676413 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.73 63.0 4.36e-01 95.7% 43.1%
3383595 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.72 61.0 5.40e-01 95.7% 95.2%
3891135 109.4.1.340 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BP28CT 0.72 63.0 3.92e-01 100.0% 29.5%
4026089 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 63.0 4.33e-01 100.0% 35.2%
3570499 604.1.1.95 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C 0.72 56.0 5.06e-01 84.3% 97.9%
1088207 109.4.1.1538 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYMPK_PTA1_N, PDS5 0.71 60.0 3.87e-01 100.0% 20.2%
3742420 109.4.1.371 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTP1_C1 0.71 58.0 3.67e-01 98.6% 17.1%
3658953 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 58.0 4.93e-01 94.3% 74.2%
3496953 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.69 51.0 5.37e-01 80.0% 98.3%
5000473 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 57.0 3.66e-01 98.6% 18.6%
3679557 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.68 53.0 5.04e-01 85.7% 78.8%
3190040 109.4.1.1556 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_HEAT, PDS5 0.68 58.0 3.31e-01 100.0% 9.6%
3910391 109.4.1.46 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.68 54.0 4.57e-01 90.0% 59.3%
3831252 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.68 58.0 4.98e-01 100.0% 65.3%
3207960 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 59.0 4.53e-01 100.0% 44.2%
3452466 109.4.1.935 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.66 53.0 3.86e-01 92.9% 33.2%
4954446 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.66 47.0 4.66e-01 77.1% 100.0%
3221040 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 58.0 4.22e-01 100.0% 61.0%
3934052 109.4.1.209 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 0.65 57.0 4.36e-01 100.0% 78.2%
2992201 6171.1.1.1 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.65 49.0 4.25e-01 81.4% 88.2%
4016737 109.4.1.182 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB 0.65 55.0 3.52e-01 100.0% 37.2%
3410251 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 53.0 4.05e-01 100.0% 36.7%
3761513 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.64 52.0 3.45e-01 97.1% 21.0%
4025103 109.4.1.142 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.64 53.0 4.25e-01 92.9% 46.4%
3659912 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 55.0 4.01e-01 100.0% 34.1%
3169569 109.4.1.1660 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27570 0.63 54.0 3.41e-01 100.0% 74.8%
3606518 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 53.0 3.56e-01 100.0% 81.0%
3530149 6171.1.1.1 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.62 46.0 3.98e-01 81.4% 83.5%
5025722 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 4.05e-01 88.6% 67.2%
3814131 109.4.1.1261 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.60 52.0 3.38e-01 100.0% 28.1%
3592455 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 47.0 3.57e-01 95.7% 36.5%
3254138 192.31.1.6 alpha bundles › Long alpha-hairpin › CP12 › CP12 › Ifi-6-16 0.58 42.0 3.91e-01 78.6% 85.6%
4969151 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 3.70e-01 100.0% 59.5%
3171807 551.1.1.1 alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.52 44.0 3.57e-01 97.1% 51.4%
D2 high residues 303-431
PDB