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IMGVR_UViG_3300022916_000249-3300022916-Ga0233431_101186811

Arc-Vir

IMGVR_UViG_3300022916_000249-3300022916-Ga0233431_101186811

Quality

67.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-97
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.75 49.0 3.96e-01 75.5% 35.9%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.71 49.0 3.80e-01 73.5% 53.6%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.69 57.0 4.51e-01 91.8% 95.1%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.67 45.0 3.81e-01 75.5% 41.0%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.66 48.0 3.62e-01 79.6% 38.3%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.65 57.0 3.48e-01 100.0% 51.4%
1l5jA02 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.65 46.0 3.06e-01 75.5% 83.0%
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 50.0 4.27e-01 91.8% 95.6%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 49.0 3.80e-01 91.8% 56.6%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 46.0 4.46e-01 81.6% 98.2%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.61 47.0 3.99e-01 91.8% 61.1%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 49.0 4.07e-01 91.8% 68.8%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.11e-01 89.8% 71.6%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 40.0 3.30e-01 75.5% 35.1%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 47.0 3.39e-01 87.8% 61.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.77e-01 87.8% 100.0%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 3.70e-01 87.8% 55.2%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 3.77e-01 87.8% 87.8%
2hf1A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 46.0 4.54e-01 95.9% 96.4%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.58 45.0 3.68e-01 89.8% 45.1%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.39e-01 89.8% 85.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.15e-01 85.7% 100.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 3.75e-01 93.9% 88.5%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 47.0 2.90e-01 100.0% 41.7%
4z9mB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.56 45.0 3.03e-01 89.8% 55.1%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 3.27e-01 73.5% 87.2%
7ewsB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.56 45.0 2.86e-01 89.8% 22.4%
2r7dA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.68e-01 75.5% 96.7%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 45.0 3.23e-01 95.9% 86.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 3.86e-01 89.8% 94.0%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 43.0 2.81e-01 98.0% 39.9%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.06e-01 89.8% 87.9%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.21e-01 77.6% 88.5%
1u0lA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.44e-01 77.6% 82.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 3.59e-01 85.7% 98.4%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.52 36.0 2.67e-01 79.6% 97.0%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 38.0 2.93e-01 85.7% 52.6%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 38.0 2.99e-01 85.7% 46.0%
2zwrB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 43.0 2.93e-01 100.0% 80.2%
4ekfA00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.51 40.0 2.85e-01 95.9% 37.5%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 38.0 2.46e-01 93.9% 17.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.50e-01 91.8% 68.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3800967 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.74 49.0 4.31e-01 81.6% 47.1%
3581513 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.74 48.0 4.09e-01 81.6% 41.2%
3510942 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.74 50.0 4.29e-01 81.6% 45.3%
3854772 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.74 48.0 3.93e-01 75.5% 36.7%
3846535 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.74 50.0 4.09e-01 81.6% 38.9%
3911194 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.73 49.0 4.14e-01 81.6% 42.5%
4815507 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.73 48.0 3.97e-01 75.5% 38.4%
3645247 4357.1.1.6 beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.72 49.0 4.08e-01 81.6% 41.2%
3622446 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.72 48.0 4.28e-01 81.6% 48.6%
3907821 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.70 46.0 3.79e-01 75.5% 36.7%
3617714 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.70 48.0 4.19e-01 81.6% 46.7%
3798336 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.70 46.0 4.07e-01 79.6% 47.1%
3914736 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.69 45.0 4.15e-01 81.6% 50.8%
3874262 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.69 48.0 3.71e-01 77.6% 32.7%
3921414 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.69 45.0 3.86e-01 75.5% 41.8%
3457638 4357.1.1.6 beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.68 45.0 3.76e-01 81.6% 37.8%
3996720 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.68 45.0 4.07e-01 77.6% 48.6%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.68 47.0 4.11e-01 73.5% 57.3%
3704287 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.68 47.0 4.39e-01 83.7% 56.9%
3877833 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.67 45.0 3.87e-01 75.5% 42.5%
3669824 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.67 49.0 4.70e-01 77.6% 69.1%
3453009 4357.1.1.6 beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.67 45.0 3.83e-01 81.6% 41.2%
4946106 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 54.0 3.33e-01 93.9% 19.4%
3934831 5.1.2.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase 0.65 56.0 3.37e-01 98.0% 55.5%
3255441 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.64 49.0 3.65e-01 83.7% 48.8%
3337215 4357.1.1.6 beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.64 43.0 3.63e-01 79.6% 40.0%
3808306 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.64 53.0 3.30e-01 100.0% 32.7%
3905680 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.63 50.0 3.01e-01 89.8% 13.6%
3995519 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.62 50.0 4.00e-01 91.8% 61.0%
4963650 4.1.1.488 beta barrels › SH3 › SH3 › SH3 › DUF7346 0.61 45.0 4.44e-01 87.8% 74.5%
3925881 5.1.4.407 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD 0.61 51.0 3.09e-01 100.0% 32.3%
3557904 101.1.2.580 alpha arrays › HTH › HTH › winged helix domain › DEPDC5_CTD 0.61 45.0 3.63e-01 81.6% 46.2%
3412674 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 51.0 4.26e-01 98.0% 67.8%
3421203 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.61 40.0 3.84e-01 73.5% 56.7%
3261011 375.1.1.85 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.61 48.0 4.85e-01 89.8% 92.0%
3871241 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.61 50.0 3.16e-01 93.9% 20.4%
3928378 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 50.0 4.33e-01 100.0% 60.0%
3961571 3699.1.1.3 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth 0.60 48.0 3.78e-01 98.0% 90.0%
3188732 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 46.0 4.11e-01 89.8% 90.7%
3262703 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 41.0 4.10e-01 77.6% 72.0%
3963560 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.59 44.0 4.15e-01 81.6% 68.3%
3804813 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.59 49.0 3.11e-01 100.0% 35.3%
5012312 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 44.0 3.27e-01 91.8% 30.0%
5004274 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 45.0 4.09e-01 93.9% 66.7%
5032559 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 45.0 3.90e-01 93.9% 78.9%
3262963 376.1.4.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.58 42.0 4.08e-01 79.6% 72.7%
4003736 3289.1.1.8 alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Strumpellin 0.58 43.0 2.33e-01 81.6% 14.0%
3481222 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 46.0 3.85e-01 91.8% 65.6%
3262965 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.57 41.0 3.84e-01 79.6% 60.9%
4929702 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 43.0 4.30e-01 93.9% 88.0%
3659007 376.1.4.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.56 39.0 3.48e-01 77.6% 71.2%
4275625 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.56 44.0 4.21e-01 98.0% 76.7%
4028249 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.56 35.0 3.49e-01 79.6% 55.6%
3990153 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 3.81e-01 87.8% 80.0%
3098421 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.55 35.0 3.61e-01 77.6% 69.8%
3281754 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.55 43.0 3.46e-01 93.9% 40.9%
5013439 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 45.0 3.61e-01 93.9% 48.0%
5050109 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.54 41.0 3.46e-01 83.7% 65.9%
3556708 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.53 42.0 3.71e-01 93.9% 58.7%
4203469 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.52 41.0 4.09e-01 100.0% 87.3%
3626626 2485.1.1.109 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF26957 0.52 39.0 2.94e-01 89.8% 87.3%
3992505 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.52 40.0 2.64e-01 93.9% 19.2%
3863134 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.51e-01 85.7% 26.8%
4614679 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 40.0 4.01e-01 89.8% 100.0%
4389625 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.51 40.0 3.95e-01 98.0% 87.3%
4239498 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.51 39.0 3.85e-01 93.9% 92.7%
3857085 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.51 35.0 3.34e-01 77.6% 66.2%