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IMGVR_UViG_3300022916_000637-3300022916-Ga0233431_100183112

Arc-Vir

IMGVR_UViG_3300022916_000637-3300022916-Ga0233431_100183112

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-98
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 52.0 6.30e-01 85.4% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 53.0 6.33e-01 85.4% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 50.0 6.00e-01 83.3% 100.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 49.0 5.62e-01 80.2% 91.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.81e-01 99.0% 95.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 5.36e-01 84.4% 91.7%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.38e-01 91.7% 93.2%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 42.0 4.28e-01 90.6% 67.4%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 45.0 4.54e-01 85.4% 72.3%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 42.0 4.10e-01 91.7% 65.0%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.61 47.0 4.03e-01 84.4% 75.5%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.60 46.0 3.93e-01 83.3% 74.1%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.60 47.0 3.94e-01 84.4% 73.5%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 45.0 4.95e-01 82.3% 94.9%
4e3eA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 43.0 2.96e-01 76.0% 90.6%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 44.0 4.34e-01 84.4% 72.5%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.76e-01 71.9% 96.0%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.58 44.0 4.21e-01 79.2% 94.5%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 39.0 3.94e-01 84.4% 69.1%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 48.0 4.82e-01 88.5% 95.8%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.48e-01 84.4% 80.6%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.62e-01 77.1% 94.6%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 45.0 4.29e-01 84.4% 75.5%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.56 42.0 3.27e-01 79.2% 95.3%
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.56 40.0 3.88e-01 76.0% 93.8%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.71e-01 70.8% 100.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 43.0 3.77e-01 83.3% 64.4%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.55 40.0 3.53e-01 77.1% 76.4%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.54 47.0 3.90e-01 95.8% 84.6%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 42.0 2.92e-01 85.4% 64.3%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.65e-01 71.9% 89.0%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 43.0 3.14e-01 88.5% 71.0%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.27e-01 72.9% 98.0%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.15e-01 84.4% 92.7%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 40.0 3.28e-01 81.2% 93.8%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 3.91e-01 90.6% 85.4%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.52 43.0 3.63e-01 90.6% 76.5%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 4.60e-01 99.0% 100.0%
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 35.0 3.79e-01 92.7% 88.0%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.69e-01 90.6% 69.7%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.76e-01 71.9% 85.7%
4w78G00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 37.0 3.12e-01 76.0% 58.3%
3ikwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.15e-01 100.0% 76.6%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.50 35.0 3.43e-01 74.0% 85.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.82 54.0 6.56e-01 84.4% 100.0%
4077367 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.80 53.0 6.36e-01 84.4% 100.0%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 52.0 6.25e-01 86.5% 100.0%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.79 52.0 6.21e-01 84.4% 100.0%
4201878 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.79 52.0 6.21e-01 86.5% 100.0%
3315471 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.77 47.0 5.01e-01 82.3% 69.4%
4944212 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.77 49.0 5.10e-01 83.3% 70.5%
3709896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 62.0 6.53e-01 89.6% 98.8%
3256053 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.74 49.0 5.07e-01 83.3% 71.1%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.74 48.0 5.20e-01 82.3% 78.8%
3913782 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 48.0 5.80e-01 82.3% 100.0%
3570369 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 53.0 5.49e-01 96.9% 80.0%
3636050 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 48.0 4.49e-01 85.4% 56.5%
3730835 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.72 46.0 4.72e-01 82.3% 66.3%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 47.0 5.60e-01 85.4% 100.0%
3627576 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 47.0 5.59e-01 79.2% 100.0%
3500542 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 49.0 5.06e-01 99.0% 76.7%
5032255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 47.0 5.36e-01 77.1% 94.3%
3584555 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 48.0 5.55e-01 83.3% 98.6%
3399965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.26e-01 96.9% 82.2%
4999741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.66e-01 84.4% 76.2%
4961202 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 43.0 4.46e-01 84.4% 70.0%
3736916 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.36e-01 85.4% 65.0%
4097328 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.65 49.0 4.53e-01 81.2% 100.0%
3218656 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 48.0 3.20e-01 78.1% 23.7%
4952364 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.64 43.0 4.52e-01 81.2% 76.5%
3290304 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.64 47.0 3.95e-01 76.0% 97.4%
3223708 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 44.0 4.07e-01 70.8% 94.2%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 5.18e-01 86.5% 98.6%
3486847 4.1.1.284 beta barrels › SH3 › SH3 › SH3 › SBNO 0.63 44.0 4.35e-01 83.3% 66.7%
3981157 222.1.1.14 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MC_hydratase 0.62 48.0 3.93e-01 80.2% 93.3%
861 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.62 48.0 4.42e-01 84.4% 97.7%
3698630 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.62 44.0 4.27e-01 91.7% 66.7%
4962346 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.61 46.0 3.87e-01 77.1% 100.0%
3733248 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 43.0 3.60e-01 72.9% 75.0%
3277369 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 4.32e-01 72.9% 95.8%
4018672 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.60 47.0 4.47e-01 83.3% 72.2%
3492680 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 47.0 4.35e-01 82.3% 68.3%
5080510 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 42.0 4.22e-01 85.4% 71.6%
3603127 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 38.0 3.98e-01 77.1% 68.9%
1563513 1.1.8.10 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Ski7_3rd 0.60 43.0 4.19e-01 84.4% 67.3%
3950922 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.60 43.0 4.06e-01 76.0% 95.0%
859 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.60 46.0 4.30e-01 84.4% 99.2%
1250095 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.59 41.0 3.52e-01 71.9% 95.4%
3297629 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 41.0 4.47e-01 75.0% 97.5%
5043858 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 3.83e-01 80.2% 95.7%
5055505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.57e-01 84.4% 90.6%
1138674 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.57 45.0 4.29e-01 84.4% 75.5%
3923766 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.21e-01 84.4% 79.1%
5064148 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 44.0 4.20e-01 82.3% 80.9%
3819893 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.55 40.0 2.65e-01 77.1% 29.8%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 46.0 4.74e-01 88.5% 100.0%
3867704 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 45.0 3.18e-01 91.7% 52.6%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 45.0 4.61e-01 89.6% 100.0%
3925547 2484.1.1.157 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.54 38.0 3.05e-01 74.0% 51.3%
3413325 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 40.0 2.76e-01 81.2% 31.3%
3799750 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 44.0 3.42e-01 86.5% 66.0%
3936087 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 45.0 3.14e-01 92.7% 55.8%
152109 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 43.0 3.16e-01 90.6% 76.2%
3232470 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 44.0 3.11e-01 93.8% 49.7%
4030465 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.52 42.0 3.71e-01 86.5% 60.7%
4089593 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 42.0 3.84e-01 89.6% 80.8%
3581460 2007.2.3.21 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.52 43.0 3.11e-01 93.8% 52.1%
3914493 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 41.0 2.61e-01 93.8% 26.5%