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IMGVR_UViG_3300022916_000637-3300022916-Ga0233431_100183155
Arc-VirIMGVR_UViG_3300022916_000637-3300022916-Ga0233431_100183155
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5i2cB01 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.63 | 54.0 | 4.00e-01 | 100.0% | 41.8% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 52.0 | 4.96e-01 | 100.0% | 92.4% |
| 2cw7A02 | 1.10.10.1010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV | 0.61 | 51.0 | 3.84e-01 | 100.0% | 78.8% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.57 | 47.0 | 4.45e-01 | 100.0% | 80.6% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.57 | 47.0 | 4.42e-01 | 100.0% | 78.3% |
| 4a17H02 | 3.30.60.300 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.54 | 31.0 | 3.38e-01 | 83.0% | 69.2% |
| 2qyxB01 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.54 | 44.0 | 3.69e-01 | 100.0% | 56.0% |
| 3ajdA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.54 | 45.0 | 4.36e-01 | 100.0% | 96.7% |
| 5wt3A01 | 3.30.70.2580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.22e-01 | 100.0% | 81.5% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 43.0 | 3.84e-01 | 100.0% | 85.9% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 3.58e-01 | 100.0% | 76.2% |
| 3qyfA03 | 1.10.10.1690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 | 0.51 | 38.0 | 3.74e-01 | 84.9% | 75.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4934893 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.69 | 54.0 | 3.59e-01 | 88.7% | 22.3% |
| 3464595 | 10.32.1.189 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CAND6-7_N | 0.64 | 43.0 | 3.02e-01 | 100.0% | 24.7% |
| 5027318 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.61 | 53.0 | 3.32e-01 | 100.0% | 23.8% |
| 5051627 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 42.0 | 3.97e-01 | 75.5% | 65.7% |
| 5042680 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.61 | 50.0 | 4.85e-01 | 100.0% | 85.0% |
| 5004352 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.59 | 50.0 | 4.75e-01 | 100.0% | 86.2% |
| 4044395 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.59 | 49.0 | 4.34e-01 | 100.0% | 89.4% |
| 4993336 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.59 | 49.0 | 4.60e-01 | 100.0% | 81.4% |
| 4943600 | 304.24.1.42 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N_2 | 0.57 | 48.0 | 4.48e-01 | 100.0% | 90.0% |
| 4978790 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 44.0 | 3.59e-01 | 88.7% | 80.6% |
| 5068324 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.57 | 47.0 | 4.41e-01 | 100.0% | 81.4% |
| 5293 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.57 | 47.0 | 4.43e-01 | 100.0% | 79.4% |
| 4948058 | 304.24.1.42 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N_2 | 0.56 | 46.0 | 4.25e-01 | 100.0% | 78.7% |
| 4928632 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.55 | 41.0 | 3.74e-01 | 83.0% | 76.0% |
| 4968901 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.55 | 45.0 | 4.31e-01 | 100.0% | 95.4% |
| 4979741 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 47.0 | 3.86e-01 | 100.0% | 68.0% |
| 3709464 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 42.0 | 3.91e-01 | 100.0% | 90.7% |
| 3987359 | 101.1.2.272 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF1803 | 0.52 | 36.0 | 3.42e-01 | 73.6% | 69.2% |
| 4979746 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 45.0 | 3.67e-01 | 100.0% | 68.0% |
D2
high
residues 58-250
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18766.8 best | SWI2_SNF2 | 30.0 | 5.80e-07 | 89.1% | 70.9% |
| PF00176.30 | SNF2-rel_dom | 33.4 | 3.80e-08 | 83.9% | 58.0% |
| PF00270.36 | DEAD | 38.4 | 1.50e-09 | 83.4% | 88.6% |
| PF04851.22 | ResIII | 76.5 | 3.20e-21 | 82.9% | 98.2% |
D3
high
residues 258-443
Domain cluster:
rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667